HsaINT0118543 @ hg19
Intron Retention
Gene
ENSG00000110048 | OSBP
Description
oxysterol binding protein [Source:HGNC Symbol;Acc:8503]
Coordinates
chr11:59368292-59368858:-
Coord C1 exon
chr11:59368756-59368858
Coord A exon
chr11:59368347-59368755
Coord C2 exon
chr11:59368292-59368346
Length
409 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
TGTGTTTCCCATCTGTACAGACG
3' ss Score
8.13
Exon sequences
Seq C1 exon
ATCAGTGCTGCTCTGGCAAAGGGGACATGAGCGATGAAGATGATGAGAATGAATTTTTTGATGCACCTGAGATCATCACCATGCCTGAAAATTTGGGCCACAA
Seq A exon
GTGAGTTATCCTTGATTGTTGAAGCAAATAAACATATCTTCACCATCAATATGGTGGTATTTTAGCATCATATTTTAACCATCAAAAGGTTAAAAACATTTCAGTGAGAGTATTATAATTGTCAATATTGAATCTGGGCCCTTTTCCCTTTTTTTTTTTTTTTTTTTGTCTCAAGATCTCTTTGTAGAATGGGCCCTTTTTCTTAAGTAAGTGAAAAAATGTCAGCTTTTTTACGTAAACAAATTCTCCAGAGATACTTAAATTCATTCCTACTCTAAATGTCGTCATTTGATCACCCATCAATAAGTTTATACAGTGTACTTGGCATTCTGCTTTGTAAAGAAATGTCCAGGACCACACTCTAGTTCTGGTCTTTGTTCTAATTCTCCTGTGTTTCCCATCTGTACAG
Seq C2 exon
ACGTACTGGCAGCAATATCAGTGGAGCCAGCAGTGACATCAGCCTTGATGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000110048-OSBP:NM_002556:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.857 A=NA C2=0.789
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)