HsaINT0118543 @ hg38
Intron Retention
Gene
ENSG00000110048 | OSBP
Description
oxysterol binding protein [Source:HGNC Symbol;Acc:HGNC:8503]
Coordinates
chr11:59600819-59601385:-
Coord C1 exon
chr11:59601283-59601385
Coord A exon
chr11:59600874-59601282
Coord C2 exon
chr11:59600819-59600873
Length
409 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
TGTGTTTCCCATCTGTACAGACG
3' ss Score
8.13
Exon sequences
Seq C1 exon
ATCAGTGCTGCTCTGGCAAAGGGGACATGAGCGATGAAGATGATGAGAATGAATTTTTTGATGCACCTGAGATCATCACCATGCCTGAAAATTTGGGCCACAA
Seq A exon
GTGAGTTATCCTTGATTGTTGAAGCAAATAAACATATCTTCACCATCAATATGGTGGTATTTTAGCATCATATTTTAACCATCAAAAGGTTAAAAACATTTCAGTGAGAGTATTATAATTGTCAATATTGAATCTGGGCCCTTTTCCCTTTTTTTTTTTTTTTTTTTGTCTCAAGATCTCTTTGTAGAATGGGCCCTTTTTCTTAAGTAAGTGAAAAAATGTCAGCTTTTTTACGTAAACAAATTCTCCAGAGATACTTAAATTCATTCCTACTCTAAATGTCGTCATTTGATCACCCATCAATAAGTTTATACAGTGTACTTGGCATTCTGCTTTGTAAAGAAATGTCCAGGACCACACTCTAGTTCTGGTCTTTGTTCTAATTCTCCTGTGTTTCCCATCTGTACAG
Seq C2 exon
ACGTACTGGCAGCAATATCAGTGGAGCCAGCAGTGACATCAGCCTTGATGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000110048:ENST00000263847:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.790 A=NA C2=0.734
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development