DreINT0108705 @ danRer10
Intron Retention
Gene
ENSDARG00000004634 | osbp
Description
oxysterol binding protein [Source:ZFIN;Acc:ZDB-GENE-090312-18]
Coordinates
chr1:52044284-52044628:+
Coord C1 exon
chr1:52044284-52044398
Coord A exon
chr1:52044399-52044564
Coord C2 exon
chr1:52044565-52044628
Length
166 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTTT
5' ss Score
2.36
3' ss Seq
CCTCTTTCCATTTCTCTCAGGAG
3' ss Score
8.98
Exon sequences
Seq C1 exon
GCTCAGTTCCAGGAAAGGGTGACGCCAGTGACGAGGATGAGGAGAATGAATTTTTTGATGCCTGCGAGGATGTTCAGGAGTTCATCACTGTACCAGCAGACCCCAAATATCACAG
Seq A exon
GTCTTTATCTGCCGCCTCCCTTTTACACCCATCCTTTTGTCTGTCCCTTAACTCCTCATTTGAGTGTTACTGGACCTAAGTGTGTGTCTCTGCCTTCCCTTTCCCTTTCCTCCTCTCTCTCTCACACTCTCTGGCTCTCTTCATACCCTCTTTCCATTTCTCTCAG
Seq C2 exon
GAGATCCGGCAGCAATGTCAGCGGGATCAGTAGCGAAATGGGAATGGATGACGGGACGACGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004634:ENSDART00000141530:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.615 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAGTTCCAGGAAAGGGTG
R:
GTCCCGTCATCCATTCCCATT
Band lengths:
172-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]