GgaINT1020404 @ galGal4
Intron Retention
Gene
ENSGALG00000027392 | OSBP
Description
oxysterol binding protein [Source:HGNC Symbol;Acc:HGNC:8503]
Coordinates
chr5:504066-504302:+
Coord C1 exon
chr5:504066-504168
Coord A exon
chr5:504169-504229
Coord C2 exon
chr5:504230-504302
Length
61 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
CGGGCCTAACGCCAACCCCCTGC
3' ss Score
-16.32
Exon sequences
Seq C1 exon
ATCCCTGCTGCTCCGCAAAAGGAGACTTGAGCGACGAGGATGATGACAACGAGTTCTTTGATGCCCCGGAGATCATCACTGTGCCGGAGAGCATGGGCCACAA
Seq A exon
GTGAGTACGGGGGCTGCCCCCAGGGTGGACAGAGGCAGAGCCGGGCCTAACGCCAACCCCC
Seq C2 exon
TGCCCCCCCCCCCTCCAGGCGCACCGGCAGCAACATCAGCGGCACCAGCAGCGACATCAGCCTGGATGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027392:ENSGALT00000042982:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGACGAGGATGATGACAAC
R:
CTGCTCATCCAGGCTGATGTC
Band lengths:
147-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]