BtaINT0105894 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020332 | OSBP
Description
oxysterol-binding protein 1 [Source:RefSeq peptide;Acc:NP_001192899]
Coordinates
chr15:84127904-84128366:-
Coord C1 exon
chr15:84128286-84128366
Coord A exon
chr15:84127999-84128285
Coord C2 exon
chr15:84127904-84127998
Length
287 bp
Sequences
Splice sites
5' ss Seq
CTGTGCCCG
5' ss Score
-22.92
3' ss Seq
TGGCGAGGACCACCGTCTAGTTC
3' ss Score
-3.24
Exon sequences
Seq C1 exon
ATCAGTCCTGCTCTGGCAAAGGAGACCTGAGTGATGAAGACGACGAGAACGAGTTTTTTGATGCCCCTGAGATCATCACTG
Seq A exon
TGCCCGAGAACTTGGGCCACAAGTGAGTCCGGCTTGACTGCCCTCCCCTGGCCCAGCCATGAAAGGCAGGACGTGTTTCAGTGGGGATATCCTGGTTGTTGCCCAAGGCCTGGACTCTTTGCCCTAAGTACCTGGGAGAGCGTCTGTCTTTACGTGAGCAGCTTCTCCAGAGACGCTTATTCCTACGCACGCTTTTCTACCTGTCGTCTCTTGGCCACTCGTGAATAAGTTTGTGCAGTGTCCTTAGCGTTCTGCTCTGTGAAGACGTGGCGAGGACCACCGTCTAG
Seq C2 exon
TTCTGATCTTTATTCTCATCCCCGTTTCCCGCCCGTGTAGACGCACCGGCAGCAACATCAGCGGAGCCAGCAGTGACATCAGCCTCGATGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020332:ENSBTAT00000027095:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.203
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGCAAAGGAGACCTGAGT
R:
TGTTCATCGAGGCTGATGTCAC
Band lengths:
164-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development