MmuINT0113581 @ mm9
Intron Retention
Gene
ENSMUSG00000024687 | Osbp
Description
oxysterol binding protein [Source:MGI Symbol;Acc:MGI:97447]
Coordinates
chr19:12052727-12053175:+
Coord C1 exon
chr19:12052727-12052829
Coord A exon
chr19:12052830-12053120
Coord C2 exon
chr19:12053121-12053175
Length
291 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
CTGTTTTTTCATCCATGAAGACG
3' ss Score
4.65
Exon sequences
Seq C1 exon
ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA
Seq A exon
GTGAGTCCTTGACTATTGAAGAAAATGAACATGTGTGTTTACATGATGAGACTCTTTTCCATGAGTTTTCCATGAGAATCTGAGCTGGTGGTGGTTGCTAAGATGTGGGCTCTTTGTGTTAAGTAGATGGAAAACCGTTAGCATTTACATTGAATTTTTCAGAGATCCCAAACTCAAGCCATTCTAAGTATGTGCAGTATATTTGTTATTGTGCTTCATAAAGAACTGGTGAGGACCAAACTTCAGTTCTGGTCTTTGTTCTAACTCTCCTCTGTTTTTTCATCCATGAAG
Seq C2 exon
ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTCAGCCTTGATGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024687-Osbp:NM_001033174:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.850 A=NA C2=0.961
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTGCTGTTCTGGCAAAGG
R:
TGTTCATCAAGGCTGACATCACT
Band lengths:
156-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: