DreINT0015821 @ danRer10
Intron Retention
Gene
ENSDARG00000022772 | OSBP2 (1 of 2)
Description
oxysterol binding protein 2 [Source:HGNC Symbol;Acc:HGNC:8504]
Coordinates
chr5:24082429-24084922:-
Coord C1 exon
chr5:24084799-24084922
Coord A exon
chr5:24082496-24084798
Coord C2 exon
chr5:24082429-24082495
Length
2303 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
TGTCTATGTTGTCTGTTCAGGCG
3' ss Score
8.64
Exon sequences
Seq C1 exon
GAGTGAGTGAAAGGCCCAGGAAAGAGGAAGCGAGTGATGAAGATGAGGATACAGAGTATTTTGATGCCATGGAGGACTCACCTGCCTTTATAACAGTGACTGCCACGGACCCCTCTCAACACAG
Seq A exon
GTCAGCCTCATTCCACCCCCAAAAAATCATATAGATGTTTTTCAGCAACAAGAGGCTAAGTAATCCAAATAGTATCTGGATGCAGCCTTTATGATGCAAGCTGAGATTGCATTACTTAGCAATGCAATGTCAGACACAATGCACTCAAATGGAGCTAGTGACGTCACTGTGAGGGGTTGGGTTAGGTGTGGGGTTAGCTGAGCCCATTAAAAAGCATTGGATGCAGCCCAGATTGCACTGCACCACGTCTGCATCCAGTCCTCTTACAAGTAATCTGGCAAGGTTTTATTTTTTGTTTGAATTATCCCTTTAAGTGTTGTTCTGCCAGGTGCTTTTGCTAACACGTGACTAGAGGATGATGACACTGATCTAGAGGTCTGCATTCCCACACGATTCCCATGGGAGCCACACAGATCTAGACTAAATGTGTAAGCGAGTACAGGCGGCATTCGTTTAAGTCGTGGCTGAGAGAAAGGGTTATGAGAAAATGCATAGTTTGAATCGAATGCCAGCATCCAGGAATTATCAATACATTTCTGAAAGTACCTTTCCACTAATTCTGAGACTTCAATTCATTCATTTTGTCCACTGGAGAGCAATGCATAATTTGTGGGTCTTGTTTGAGCTTCTGTTGTGTTGGAAAGTTTGAACTTTTGTAGCTAAACTATATGAGCAGGGTGTGTGAGAACACCTAGATCAACATAACATCAATATGTTAAAATGAAAATATCTTCAGCCAGACTGCTGTATTTTAATAACATTATTAGTGCTTATGGTGACAATTACTAGTGCTTTGGAGGCAAAAGATTATTCTTTAAATGTTGTTTCTTTAAAATGTGCGGTTATGAATAGTTTTGTGTGAACGTAGCCTTAGAAAATTTGATATGCATGTCTTTTAAGTGGATTCATGCAGTCAGGTATGTTGCAACGCAGGCTCATTTTGAAAACGTAGCTCTATACACATTTCTAGAGATTGCAAATTATGTAGCCAGAAGTACGTATGGCTGCATTTCATCTTTAAAAGCAAGCGCTACAGGGCGGTTACCTTTGTATGGACAGCTTTCCTGCTGTTACCAGTTTGTCCAGTTAGCTTGCCATGTACGTCGGCAGACTTGAGACCCAGAGAGGAGTTGACCATGACGACAGGGTCTTGTGAAGATCGGTTCCAGAAAGTGGTAAAACAAAAAAGAAGACAAAAAAAACTAAATAAACAAGTAAATGACAGGGTGAGAATGTGGTGAAAAATCAGATGATCAGGGGCCTCGTGTACGAAGACTTGCGTTGAATTCATATTAAAGCATTGCGTGCAAACAAAGCTGTAAATGTGTGTACGCAGTAAAGTAAGTTCAGATGTATGAAACACACGCATATTCTTTTTGTACATCCGACTTAATGTGAAACTGAGCGCATGTACGCGAGCGCAAAACCCCTCCCTGCCTCCTCTTTCCCGCACTACATATCAGATTTTGCCTACTCTTCATCACGAGGAAGACAAGTAGAAATCATTAATAAATCTGTGTATTATGTTAAGCGCATATGAGCATCACATATTATTTGCACATTTATTGAATGGAAATGTTTCCGATTCATGTATGCAAATTCATCTTCAGATGGTGCCTTTATAGCACTGTGAGTGCAGTGGATCGCTCTGATTACATTGGGAAAACCGGCGATCGCTGCAAATTACGATTTAATGTTTGGCTGGTCAACTGCATGGTATGGAAACCTTATATACCTGCTAGACATGCGGTTTTTAGGCCCCAGGGCTTTTCTTTTTCTGGATTGATTTTTAAACCGTCGATTAGGTTTAGGGAAGTGGATGAGCGGGCCAAACGGTGCTTTTGGCAACACTATTGGTTTGTTTTAGGGAAAGAGGAGAGTGGATCAGTCGATCGGTCAGTCTAGTCAGTCAGTCGACAGCAACCTCTGCTGGATTTACGAACAGCAGGCTTCAATGGCACTCGCGAGAGAAATTTGAGATCCTAAAAACTGTACACAGCTGCCTCTGGCAGATTCACCAAAAAATATATATATATTTTTTTTTATTTTATAGCGTATACGTATGCATATAGCGGTACATTTTCAAAATGAGCCTGGGTTGATATTATGTGTGGTTATCTTTTTTTATCTTGATTTATTTTCTATTCGTTTATTTTATTATATTAAATAATAGAGGAAAACATCTGCTAACACGGCATCTTCTAAGATATGATTTTTGCCAAATAAATCAAACAATGTGACACTTGTGTTTACTTATTTGTCTGCATGTGATCCTCTAAGCGCTGTCTATGTTGTCTGTTCAG
Seq C2 exon
GCGTTCTCAGAGTAATCTCAGCGGTGCTAGTGGAGGACAGCCCAGTGACTGGAACCAGGATGACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022772:ENSDART00000033630:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]