HsaINT0118556 @ hg19
Intron Retention
Gene
ENSG00000184792 | OSBP2
Description
oxysterol binding protein 2 [Source:HGNC Symbol;Acc:8504]
Coordinates
chr22:31284210-31285221:+
Coord C1 exon
chr22:31284210-31284327
Coord A exon
chr22:31284328-31285163
Coord C2 exon
chr22:31285164-31285221
Length
836 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CTCCCGCTTTGTATTTCCAGCAG
3' ss Score
7.78
Exon sequences
Seq C1 exon
GAAGCCTCTTGACTCCCAAAGGAGAGGACAGTGAGGAAGATGAAGATACCGAGTACTTTGATGCCATGGAAGACTCCACATCCTTCATCACCGTGATCACCGAGGCCAAGGAAGACAG
Seq A exon
GTAAGGTGGCTGCAGCTGGGCAGAGCCTCCCCCACCCTGGTCTTAGGCTGCATCTGGTCTTTTCACCAGCTATCTAGTTGTCTACTTGGGGTTTTCTTTCCTTTAAATCTTGCTTTGGCCAGGCCCAGTGGCTCCCAGCACTTTGGGAGGCCAAGGGTAAGAAGATTGCTTGAATACAAGAGTTTGAGACCAGCCTGGGCAACATGGCGAAACCCTGTCTCTACAAAAAATACAAAAACTAGCCAGGCATGGTAGTGCAGGCCTGTAGTCCCAGCTACTTGGGAGGCTGAAGTGGGAGGGTCGCTTGAGCCCAGGGAGGTGGAGGCTGCAGTGAGCCATGGTCATGCCACTGCACTCTAGCCTGGGCAACAGAGAGACCCTGTCTCAAAAAATCAATAATCTATCGGTCTTGCTCCAGATGGGATTTCATTGTTGTGTGAGCCTCATAGAGTATACTTACACAAACCTAGCTGATAGAGCCTGCCACACACCTGGGCTATATGGCACAGCCTATAGCTCCTGGGCTACAAACCTGTACAACATGTGACTGTACTGAATATTGTAGGCAATTGTGACACAATGGTTAAGGATTTGTGTATCTAAACATAGAAAAGGTATATTAAAAATACGATATGATAGTCTTATGGGACCACTGTCATATACACTATCCACCCTTGAAATGTTGTTATTGCGGTGCCTGTCTACACACAGAACACACGGCAGTGACCAGGACATTTACTAGCAATGAAAATGATGTTGTCTGGAGAGAGGATGGGCCAGGTCCCAAGGAGACCTCGGGATTCATTAGTAACTTGCCTCCCGCTTTGTATTTCCAG
Seq C2 exon
CAGAAAAGCTGAAGGTAGCACCGGGACAAGTTCCGTGGACTGGAGCTCAGCAGACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184792-OSBP2:NM_030758:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.723 A=NA C2=0.816
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0123713=Oxysterol_BP=PU(0.6=10.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)