BtaINT0106592 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014927 | OXSR1
Description
oxidative stress responsive 1 [Source:HGNC Symbol;Acc:HGNC:8508]
Coordinates
chr22:11758159-11758890:+
Coord C1 exon
chr22:11758159-11758223
Coord A exon
chr22:11758224-11758612
Coord C2 exon
chr22:11758613-11758890
Length
389 bp
Sequences
Splice sites
5' ss Seq
CTGGTATTC
5' ss Score
1.5
3' ss Seq
TCATTTTGTTTGGTTCTTAGGCG
3' ss Score
8.28
Exon sequences
Seq C1 exon
TGGCAGCTAATTTGCAGAAGATTGTGGAAGAACCCCAGTCAAATCGATCCGTCACCTTCAAACTG
Seq A exon
GTATTCATCCCTTCCTTCTTGTTAAACTGTCTCACTTTTACACACCAGCAGCCTCTGCAGACCAGCTTCCGTATTCCCTGAGTGATGAGAACAATCAAGTCTGGTGATTGTTTAGCTTCCCCATGCCCTGGGCTGATGTCTCTCTTCATTGGGCTCCCTTCCCCTCTCCCTCCCAGGAAGCCTCCTACCCGAAGCCCTCAACTGTTTATTCTCGAAACAGATTGTCAGGCTGACTCCACCTTTGTACCTAGACTCCATCTGCCTCATGTTTGTATCCCAGGGACCTTTCCCCAACTGCCCTCTCTCCTACAATCTCCATGTCAGTTTTAATTATTACCTGCAATTTTGTTTCTGAATAACCACAGCTTCTCATTTTGTTTGGTTCTTAG
Seq C2 exon
GCGTCTGGTGTCGAAGGCTCAGATATTCCTGATGATGGTAAACTAATAGGATTTGCCCAGCTCAGCATCAGCTAAAACACAGCCCTGGAAGAGGCAGCCGAAGGAGATTCCACACATGCGTGTCTCTGTTGCTTCTGTTGGCCTAAACCCACTACTGCCAAAGAACCCAGCAACAAACCTCCCAGCTAGGAGCTTTAGAGGTCTTTCTTTTATGTTTTTCCTGCCATCATCCCTGCTTTTTCCCACAGGGAAAGAAAAGTTGGATCACCAGTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014927:ENSBTAT00000019872:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAGCTAATTTGCAGAAGA
R:
TGGCCACTGGTGATCCAACTT
Band lengths:
342-731
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]