MmuINT0114253 @ mm9
Intron Retention
Gene
ENSMUSG00000036737 | Oxsr1
Description
oxidative-stress responsive 1 [Source:MGI Symbol;Acc:MGI:1917378]
Coordinates
chr9:119149784-119150893:-
Coord C1 exon
chr9:119150829-119150893
Coord A exon
chr9:119150335-119150828
Coord C2 exon
chr9:119149784-119150334
Length
494 bp
Sequences
Splice sites
5' ss Seq
CTGGTACTC
5' ss Score
2.63
3' ss Seq
TCATTTTGTTTGGTTCGTAGGCA
3' ss Score
8.32
Exon sequences
Seq C1 exon
TGGCAGCCAATCTGCAGAAGATTGTGGAAGAACCTCAGTCAAACCGATCTGTCACTTTCAAACTG
Seq A exon
GTACTCACCCTTCCTCTCTAGACAGCTGTTCCATCCCCTAACTGCCAAGGCTAGAGAGTATGCTGAGTCAGTGGGGCAGTGGTGGTGCACGCTTTTAATCCCAGCATTTGGGAAGCAGAGGCAGGTGGCTGAGTTTGAGGACAGCCGAGGCTACACAGAGAAAAACCCTGTCCTGAAAAACCAAAAACGGCTCTGCCGAGTTGTGTTCGTTCATTTTGCCCAAGCCCTGACTGCACTCTTAGTCTGCATGGCCTCACTTCTCTCCTTCCTAGAAGCTACAACCCAGGCCTCTAACTCTTCCAAGGAAGTTATAAAGCTATTTGACATAGTTATACAAACAGCCCCAGCATTTCTAGAAGAAACACAGTGGCCTCTTTATATCTCAGGGACCTTTCACCTACCGCCTTCCTTTCTGCAGCCCCTTATCCGTTTTTATTGCTACCCGAACTTTTGTTTATAAATTGCCACACCTTGTCATTTTGTTTGGTTCGTAG
Seq C2 exon
GCATCTGGTGTTGAAGGCTCGGATATTCCTGATGATGGCAAACTGATAGGATTTGCCCAGCTCAGCATCAGCTAAACCACAGACCTGGAAGAGTCAGCCTAGGAGATGCCACACATGCACATGTCTGTTGCTTCTGTTGGCCTGAACCTACAACTGCCAAAGAACCCAGCAACAAACCTCCCAGCTTGGAGCTTTAGTTTTTTTCTTTGTTTTTCTTGCTGCCCTCCTCCCTGCCCCCCTTTTCTTACAAGGAAAGAAAAGTTGGATCGTCAGTGGCCAGCCTCCCCTCAGAGAGTTCCGTTGGTAGATACGCTGCTCATGTCCCCTCTCCCTCCATCTGAGAAGCAGAAGCGGCCAGTGTGCCTCAAGGCCCAGGATGGAAGACTCTCAACTCATTCTTGCCTTACTACAGTGATGGTCCCAGTGGATAGAGCAGCTGCACTGGGCAACCTCATCTTGCCTGCTCTCCCGCACCTGCTGGGACATGAGCATCTTGGGATATCTCTTTAACACTCAAGTAGCAATTAAAGTTGATTGTTCAGCTGGAGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036737-Oxsr1:NM_133985:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=NA C2=0.042
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGAACCTCAGTCAAACCG
R:
AACGGAACTCTCTGAGGGGAG
Band lengths:
343-837
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: