GgaINT0091659 @ galGal4
Intron Retention
Gene
ENSGALG00000005979 | OXSR1
Description
oxidative stress responsive 1 [Source:HGNC Symbol;Acc:HGNC:8508]
Coordinates
chr2:4912533-4916752:+
Coord C1 exon
chr2:4912533-4912597
Coord A exon
chr2:4912598-4913444
Coord C2 exon
chr2:4913445-4916752
Length
847 bp
Sequences
Splice sites
5' ss Seq
CTGGTATTT
5' ss Score
3.5
3' ss Seq
CTCTTTTCCTTGTGTTCCAGGCA
3' ss Score
10.72
Exon sequences
Seq C1 exon
TTGCAGCTAATTTGCAGAAAATTGTGGAAGAGCCCCAAGCAAACAGATCCGTCACTTTCAAACTG
Seq A exon
GTATTTATTCCTGTTCCCTAATTGAACAAGCTGTCACTTGCAAAGATAAAGCATTGCATATAGATGCCTGTGGTGTCTACTGTGGGCATCTAATGTATGCACTCTAAATCCTCCTTTCCAAAGCTTCCAACTGGTTGTCTAATAGTAGGCAATGCAGGCTCCCATCTTGTCCTCCGAGCAGGACCTGGGTTAAATAACTGTGTCAGATGATGTGCTAACACAGAGCTTCCCTTGCCCCGACCAGTAAGTGTACCAAAATGTTACAGAGGGGTATTTTCTGGGCCTGGAAGTTACACAGGTCTGGAAATGGCAGGAATATGTCAGCGCAGGTAAGTGGGCTAAGAAATGTCAGCGACTCCTTGAAGGAGGAGGGTTTCAGAGGAAGAAGTGAAGGGGGAAAAGCCAAAAGCAGAGAAGGTAGGCCAGAGGAGGAGAGATACCAGCAGAGATAGTGAAATGCATAGATAACTATAGTGATAAAGCGAGGGTGTAGCTGTTTTATTGACAGTGAAGCCATAAATTATGTTCCTTTTGACCTTTTCCATCAACAAGCTGTTCTTTTCTCCCTGTTTAGTGCATGTAGCCCTAGCCAGAGCAGATGCTGGCAGACCTTCAGTCCCAGCTCTTCCTAGCTCAAAAAAAAACAAACAAATCCCAAACAAAAAAAAAAAAAAACCCCAAAGCTCAATTTTAACTTTGGGTGATGCTGGCTGCAGTGCAAAACTGTCTTGTAACTGCTGCCTCCCTAAACTATGTCTGTTGTACCTCGTAGTGATACTAAGCATGGTGTGAGTCATAAGGCAGAGCATGTGTGTTGCTATTTGGATCTCTTTTCCTTGTGTTCCAG
Seq C2 exon
GCATCTGGTGTCGAAGGCTCAGATATCCCCGATGATGGCAAACTTATAGGATTTGCACAGCTCAGCATCAGCTAAACAATGGCCCCAGGAGATGATTCCCAACAGAGAACCCACATGTGCATATTCGTAATGCTTCTGTTAGCCTAAAAAAAAACCACTACTGCCAAAGAATCGAACTACAGCCCCCTTCCTAGAAGCTTTAACATTCTCCTAAATAGGATCACAAACCTTCCTGAGATTACCGGTGGCGTTTACACCTTTTGTAAACAAGTCTCATGTTTTTGTATGTCATCTCAAACATGCAGATCCAACATGTCATTGCCTGCATGTTCATATTATTATTGCCTTACTTTAAAGAAAAATACTACTGAGTACGAAGCGGGGGTTCCACTGCTCTGATGATCTCGCCTAAATGTTTGCTTACATGTGGTTTCATTTTTTTTTTCACTTGCTATTTTTGCACAAGTTTTAATACCGAACAGATCTTTTTTTTGTTGTTGTTCTTTACCTGCTTCTCCTTCCATCTGAAACACCAGTGTACATGCTGCTTGGGTCACCTGGAGTGCTGAGAAATCTGCTTCTCTTCAGCTGTATTTTTAAACCGCTGGTTTGAATGCTTGCACCTGAGAAGGCAAGCCAAGTCTTAACCCACAGGAGGGAGAGCCTTCTTCCCTTGTGTTTGTGTTTTTGAGAAGTTCCTCGACTTCAGAGTGTTAGAAGTCAGCTTCCCTTTGTAAACTGCCTTAATTTTTTTTTTATTTTTTACCATTTGGGTTCTCTCCACATGAGTGCCAGGCGTGGCATGAGGGCTGAACCTCTTAATTTACATTAAGCAGTCCTTCTTCAAAACAGGTCTTTCAATCTACATCCTTAGATGTAGTCTGTTCTTAAAGCAGAGCAACGAGGCGCTGCTGTCTGGAAACTGGTCTTGCAGATGATCTACAAACTCACTACTCACAGTCACAGGGAGAGGAGATCTGCGTCACTGCGCTTGGAAAAGACGCGCTTGGGACTGCTCTTGAGACCCAGTCTGTTGTGCCTGGCTGTGCGAGTCCTCCCTGACGTGTTTCCCAGACCCTTGCAAACTGGTACCCGTGGAACCATCCTTGTTGTGATTTACAGCAATAAAGAATTGCCAGCAGAGCAGCGTTACTGGGCAAGCGAGCGCCGGACTGTGTCCCTCCTGCACTGAGCGCTGGGGTCATCAGCCTTGGCGGCGGTCCGAGCCTCCATGTCTGATCAGGATGTCACCAAAACCCTGTCACACGTATTTAGGTTTTCTTTCGATGTGGTGTTGAATTTCTACAGGAATAATATGAATTACACTTGGAGTTTGATAAGAGACACTTGTCATGCAATACGTGAGGAATAAATGGTGTTGATTTCTTTTTTTTTTTCCTACAGTCTCACAGTTGGCCTTGGTAACTGCTGTTGGCTCTGGAGTGTTTTCTGCACAGAAATTGTAAGCCTGTCATGTAACACACAGATGGAGACGCGTTTGGTTTCCGTCAGCCACAAACAATGCAGAAACAGAGTGTTTAAGCAGAATGAGTGGGTTCAATTAGGACATTTTTTATTTCTGAGTCCTCTGATGAGCAACCTATATTTATATATTTTTCTTGATGAGCAGCTGCGGAAGCTTCCTGAGTTGTGCATGTTCTTTTTTATACTGCCAGTGTCCCTTTTAGTCTGTAGGTGGGTAGTGGATATGTTCCCATAGGTGCTGCCAAGTGTCTGCAGCCCTGTTGCTGGTGAGTGAGAAGGCAATGCCGACGAGGAGGAGGGTCTGAGAGTTGAGAGCGCCCTGGGGTGCTGAGCAGATGCTCTCAACAGCTGAGGTAGTGAATGTCTGATGTTGGGGAGCTGGTGGTGGCTGGGCTTGGCTGAGTCTGCATGCACATGCATGTGCCAGCTCTCACATTTCTTTGTGTTACTTGACACGAAGCACTCCCAAAGGCTTCCCCCAGAGAGTTTCCTGGCTTGGGAAGAGCAGGCTGGCATTCTGATTGTTCGTGTCACCCCATGGGAAATAGGAATGTGTTGGAAACCACTAGGATGTGGAGATGAGGCAGTCTTGGTGCAGCATTGTTTTTCCCTTCTGCCTGTGTGCTGTGGGGGACTGCTTGTTGGTTTGCGTCCTGGTGCTGAGAAAGGTAGGACTTGAACTGCCCAAATGAAACAATGCAGCCTCTATTTATTAAGTTATTCCCCACCTTCCCAATGCCAGGACGTAGAGCGTGAGCAGCTCACACTAACCCGAGGCTCCTTAGTTCTTTATCGGAGAAAATAAGTAAGGAAGAAACCGATGTCACTTGCTCTGTAGTTCTCCAGATGTTTTGGGTAGCAATCCAGAATTTTCACTTGGGCTCTTACAGTGCTAGACAACTGTCTTTTCTGATGTTGTTCCAGTAAGTGCCAACGCTGTTCATAATTGTTTTCCAGTGTCATGAATTTGGTTTTTTTTTTCGTGGAAATTTCTGATCCGAACCTGGAAGCAGGTGGTAATTTTAAGTTAGTTCCTACTTTTAAGGACAATGCTCTGTTAATGAAAACGGATCCTCTTCACGACTTCGGTGTATTGTAGATTATAATGAAAGATGTAAAATATTCAGGCTTTTTTTCCCCCCCCCCTTTTTTGGACTTTGTATTTTACTGCATGTCTCTAATTTTTAATCAATAAAGAAGGAATTGTCCATTGTCACATGTTGGCTGTGTGGTTTACCTGTCATTTGGGAAGGGGTTTGGTTGGCATTGCACTACTTTGGGCATTACTCTGGGGCAAGGGTCTGGTAGTCCTCCAGCCTCCTGTAAATGCACTGCCCAGCCCAGGCTCTCCCATGCTGGCTCTTTTATCCATCATAAACATAAGGAAATGTTAGAATATCCCAAGTTGGGCTTCTCGGTGCTTTTGGGCACCTATGGAGACACTCACAGAACCTCACCTGAGGACAAATGCTGCTCCTGCTTCAGGGGATAGGCTGAACAGAGCTGCTTTCATGCTTACAGTGATCATTTTAATGCATTTTGAGCTGAGTTTTGCCAAACTTGCCTAAAGCAACACTTCCTTACGTCAGATACAGAACCATGTGTGCCTTCCCCATAGCTCTGCATGCAGCCTACACCAGGCTGTGGGGTAGCCCAGAAGGCAGAGTCCCATGTGTGCCTGTTGCAGAAGGAAATGGGAAGGAAAGGAAGTTGCAGAAGGAAATGGGGCTCCAACAGCTAGGAGTGTGGCCATCCAGACACCTTTTCTCATCTCCAGCTCTGCTATCCATTAGCATTGCTCCGTTTTCTCCCTTGGACTTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005979:ENSGALT00000009616:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.042
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGCAAACAGATCCGTCACT
R:
TGCAGGCAATGACATGTTGGA
Band lengths:
358-1205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]