GgaINT0091659 @ galGal3
Intron Retention
Gene
ENSGALG00000005979 | OXSR1
Description
NA
Coordinates
chr2:4842040-4843115:+
Coord C1 exon
chr2:4842040-4842104
Coord A exon
chr2:4842105-4842951
Coord C2 exon
chr2:4842952-4843115
Length
847 bp
Sequences
Splice sites
5' ss Seq
CTGGTATTT
5' ss Score
3.5
3' ss Seq
CTCTTTTCCTTGTGTTCCAGGCA
3' ss Score
10.72
Exon sequences
Seq C1 exon
TTGCAGCTAATTTGCAGAAAATTGTGGAAGAGCCCCAAGCAAACAGATCCGTCACTTTCAAACTG
Seq A exon
GTATTTATTCCTGTTCCCTAATTGAACAAGCTGTCACTTGCAAAGATAAAGCATTGCATATAGATGCCTGTGGTGTCTACTGTGGGCATCTAATGTATGCACTCTAAATCCTCCTTTCCAAAGCTTCCAACTGGTTGTCTAATAGTAGGCAATGCAGGCTCCCATCTTGTCCTCCGAGCAGGACCTGGGTTAAATAACTGTGTCAGATGATGTGCTAACACAGAGCTTCCCTTGCCCCGACCAGTAAGTGTACCAAAATGTTACAGAGGGGTATTTTCTGGGCCTGGAAGTTACACAGGTCTGGAAATGGCAGGAATATGTCAGCGCAGGTAAGTGGGCTAAGAAATGTCAGCGACTCCTTGAAGGAGGAGGGTTTCAGAGGAAGAAGTGAAGGGGGAAAAGCCAAAAGCAGAGAAGGTAGGCCAGAGGAGGAGAGATACCAGCAGAGATAGTGAAATGCATAGATAACTATAGTGATAAAGCGAGGGTGTAGCTGTTTTATTGACAGTGAAGCCATAAATTATGTTCCTTTTGACCTTTTCCATCAACAAGCTGTTCTTTTCTCCCTGTTTAGTGCATGTAGCCCTAGCCAGAGCAGATGCTGGCAGACCTTCAGTCCCAGCTCTTCCTAGCTCAAAAAAAAACAAACAAATCCCAAACAAAAAAAAAAAAAAACCCCAAAGCTCAATTTTAACTTTGGGTGATGCTGGCTGCAGTGCAAAACTGTCTTGTAACTGCTGCCTCCCTAAACTATGTCTGTTGTACCTCGTAGTGATACTAAGCATGGTGTGAGTCATAAGGCAGAGCATGTGTGTTGCTATTTGGATCTCTTTTCCTTGTGTTCCAG
Seq C2 exon
GCATCTGGTGTCGAAGGCTCAGATATCCCCGATGATGGCAAACTTATAGGATTTGCACAGCTCAGCATCAGCTAAACAATGGCCCCAGGAGATGATTCCCAACAGAGAACCCACATGTGCATATTCGTAATGCTTCTGTTAGCCTAAAAAAAAACCACTACTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005979:ENSGALT00000009616:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.042
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGCTAATTTGCAGAAAATTGTG
R:
TTTTTAGGCTAACAGAAGCATTACGA
Band lengths:
214-1061
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]