RnoINT0106335 @ rn6
Intron Retention
Gene
ENSRNOG00000013136 | Oxsr1
Description
oxidative-stress responsive 1 [Source:RGD Symbol;Acc:1310466]
Coordinates
chr8:127920349-127923658:-
Coord C1 exon
chr8:127923594-127923658
Coord A exon
chr8:127923071-127923593
Coord C2 exon
chr8:127920349-127923070
Length
523 bp
Sequences
Splice sites
5' ss Seq
CTGGTATTC
5' ss Score
1.5
3' ss Seq
TCGTTCTGTTTGGTTCTTAGGCA
3' ss Score
8.92
Exon sequences
Seq C1 exon
TGGCAGCTAATTTGCAGAAAATTGTGGAAGAACCTCAGTCAAATCGATCTGTCACTTTCAAACTG
Seq A exon
GTATTCACCCTCTTCCTTCTCTGCAGACCAGCCGTTCCGTTCCCCAAAGCCGAGACTGTAGCATATGCTGAGGCAGCGGGGCGGTGGGCGCACACGCCTGTATCCCAGCATTTGGGAAGCAGAGACAGGTGGCTGAGTTTGAGGCCAGCCTGGTCTACACAGTGAGTTCCAGGACAGCCAGGGTCACCCAGAGAAAAACCCTGTCTTGAAAAACCAAAAAGACTCTGCTGAGTTGTGTTCATCCACTCTTCCCACGAGCCTGGCTGTCCTCTCAAGCTGAGTGGCTTCACCTCTCCCCGCTCCCAGAACAGAAGCCCACAACCCAGCCTCTAACTCTCCTCAGGGAAATCATAAAGCTATTTGACATAGTTATACAGCCCCATCATTTCTGCAACAAAATCTTATTTATATCTCGGGACCTTTCACCTACTACCTTTCCTTCTGCAGCCCCTTATCAGTTTTTATTGCTGCTTGAAATTTTATTTATAAATTGCCACACCTTGTCGTTCTGTTTGGTTCTTAG
Seq C2 exon
GCATCTGGTGTTGAAGGCTCGGATATTCCTGATGATGGCAAACTGATAGGATTTGCCCAGCTCAGCATCAGCTAAACCACAGCCCCGGAAGAGTCAGCCTAGGAGACGCCACACATGCACATGTCTGTTGCTTCTGTTGGCCTGAACCTACAACTGCCAAAGAACCCAGCAAGGAACCTCCCAGCTCGGAGCTTTAGTTTTTCTCTTTGTTTTTCTTGCCTCCGCCCTTCTGCCCCCCTTTTCCTACAAGGAAAGAAAAGTTGGATCACCTGTGGCCAGCATCCCCTCAGAGAGTTCCGTTGGTAGACACGTTGCTCATGTGCCCTCTCCCTCCACGTGAGAGGCAGAAGTGGCCAGTGTGCCTCGAGGCCCAGGATGGAAGTCTCTCAGCTCATTCTTGCCTTACTAAGTTGTTGGCCCCAGTGGATCGAGCAGCCGCACTGGGCAGCCTCATCTTGCCTGCTCTCCCACACCTGCTGGGACATGAGCATCTTGGGATAACTCTCTAACACTCAAGTAGCAATTAAAAGTTGATTGTTCAGCTGGAGCCCAGAGAATTTAATTACTTTTTTTTTTCTTTGTACCTGGTGTGAATTCTAGCAACCTTTGTTAGAAAAAAAGCACAGCCTCGAATGGAGGCAGCCTAAACTCTTGTCTGTCTCCTTCATGGTGTCTCTTACATGTTTTGCTGAGCTGTTCTCAGGCTGTTCTCAGGCACCCCCTTCACTGCTCCCTCCAGAAAGGGTTGCTAGCCTTAACTTCAGCTGGTGCGAAACATCTGACTGTCGTCAGACTTCAGCCATCTCCTTCAGAGTGCACCTTTGGATCGTTTACGCAGAAAACATCAAGCAATGGCTTATAAATCTTATCTTGCCAGAGGTAGTTTTTGAACAAGAAGAGAACTTTGTAAATCTTATCATTGGGAAAGTATTTTCGATATTTAAAAAAATTAAACTGAAGAAAAACTGATCTTTGACCCTCCTATGAAGATGGATTTGCCTGGCCTCTAAGTCATGAGGAAATGGTGTACACCGCTGAGAGTTTTACAGCAATAAAGGAGACTCACACGAGGCTAGAGGCCTGCCTCTGCTCCTCTCTCGCACTGACTCTGCAGGGCTTCTTCATTCGCTCAACTGCCCAAGACGGAACCTGAAGCCACCCGTGCTGTAACCTTAGGCTCATGAGTAGACGGTGTTCATTTGATGTTCTAGAAATTATGTGACTTATTCTTTAGGGTAAAAAGTGAGCTCAATGCAATATGGTTATAATCAGTGAAGTTGGCTTTTCTTTTTTCCTATCGTTAAATAGCATTTGTCTAATTGCTAATAAGCCTACCAAGTTACCAGATTGTATATGAGAGTGGAATAGTCAAGTCTGGCCTTAAAGAGACAAAGATGGGCTGTGAGCCCCTAGAGTGGGACTAGTTCGTTGCCTTTTATAGAATTCCTTGCACCCGCCATTGTTGGTTTGATGAACAAGATTAGTACCCAGTTTGTTTCCACCCTCACCCCACCTCACCCAGTTGAGGATCACAGTGCTGCTCCTATGAGCAGCTCCGTTGACTTTTTTCTTGGAACACACCTGAGAGCTTTCCCCATCTCTGACTTGTGCCACCTCATGTTTCATTCATACTGAGCCTATAGTTTCAGTCATGGACTTTCATACTGCAGAGTGCAAAGGCATGTTGGGAAAGGTGTTGGAGAGGAAGAGAAGATGGATTTGAGAAGGGAATTGAGAGAATAGAGAGTCCAAGGTCCCAGCAGGTTGGTAAAAGGAGGAACCTGTTGAGCTAGGAGGGAGAAAAAAGATTGAGCAGCTAGTTGGAAACCATTTTTTTTCTTTCTTCTTTCCCCACTTGTTAGAGGTAGGGTTGTGAGGAAGCAAAGAAGGGGAGGTGGGATGGAGTCTAGGAAGCAGGCAGTGTTGCCTTTGGCAGAAGGCTCATGGCCTGCTGTAGAATTCAATCTGGTTTCAGCAGCTTGACTTAATTCACTTAAGGGCTCAGGAAGGAATGGATATCACTGTTCTGGCTTTCGACTTAGGGGGTGCTCCAGTGCCAGGTTGGAAGTAAGCAGCAGCCTATCTCTTGTTCTCTAGACCATCATCACCTTTGCCTTGCTGTGAGGGGACAGACATGACAGTAAAAGTGGCCTGGGGCTCTTTTTCTGTTCATGGTTTGCTTTTTTGGCAAGGAGGAGGTCGGCACTAAGACCCAGGACAATGTTACTTCTCCGTGATGTGTGGTGACTTCCTTCTGCTGGCTTATGCAGTGATGGCGAGAGAACCAGTCAGCGGCGGAAACTGCAGAGATGGGACAGCTCAGAAGCCAGGGAGCTAGAGCAGAGCTTCCAGGGGACTCTGCCATTAAGTCCTCAAGATGCCCGTGTCCCTGGAGTAGGGACTGACTATAGCACAAGATAGTGTGTGCCAATATAGCCAAGAGAATGTGTGAAATAGTCTTTCTAAATGATAAAGGCATCATTTGGGTTGGTTCTTGTTTTTTGTGTTTTCCCTTCTGTTTTCAACCAAATCCTAGAGCCAGCTGAGACTGATACGTAACCTGAAGGCTAACACAAGAATGAACCAGGAATGTCAGTTCCTCCTTGGGAGGTTTGCTGGGTGGTGAAAGATGTAAAATATTACCTTCTCCCTCTTCTCTTGACTTGTATTTTACTGCATGTTTTTTTTTTTCATTTTTAATCAATAAAGAGTAAATTGTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013136:ENSRNOT00000018056:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGAAGAACCTCAGTCAAATCG
R:
ACGGAACTCTCTGAGGGGATG
Band lengths:
343-866
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]