BtaINT0106600 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014927 | OXSR1
Description
oxidative stress responsive 1 [Source:HGNC Symbol;Acc:HGNC:8508]
Coordinates
chr22:11737632-11738370:+
Coord C1 exon
chr22:11737632-11737680
Coord A exon
chr22:11737681-11738304
Coord C2 exon
chr22:11738305-11738370
Length
624 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
AACTTATTTTTCCTCTCCAGAAT
3' ss Score
9.54
Exon sequences
Seq C1 exon
ACCAACAGCAGCAGAACTGCTAAGGCACAAGTTTTTCCAAAAAGCCAAG
Seq A exon
GTAGGACATTCTAACTTGTTTCATGTATTCAGATGATCCTCCTCAAACACCTACATTAGGTTCACTGTTCAGAGGTTGCATTACCTTCAGATGATTATTTCTGGAAGAATGATGGTAGGTCAAATAATTGCTGGGGCCATTATTTAGACAACATATTTAAGATAAATATATTATCCTATAAATTAATTTAAGTATCAGGTAAAACTTAAAACAGGAAAAATTAATATTACCACTATAAATAAAATCTGTGGAAAATTCTGTGAAATATACTGAACTCTAATTTTAGGGTTTACTACTGAATTAGTAAACATCTCATTTCCCAAAGATATGGGATAAATAGGATGTTACTGTAGTTGGGAAATGTGGGACCACAACCTCAAAGGACGTATGTTAAAGCAAACTTTTCATAGATGGTGGTTCATGCAATACATTAAAGCTTTCTCTCAGTTTATAAAGTCATGGTAGTATTATACTAAAGGATCTTCAGAATGAAAGAATAGAAGCTTTTCTCAAACTTTATAAAAACAGTTACTATACCACATTAATAGTGGTGAATATTTCTATGTCAATTTTTTTGTTCAGTAAAAACTTCTTATGAAAAGAAAACTTATTTTTCCTCTCCAG
Seq C2 exon
AATAAAGAATTTCTTCAAGAAAAAATATTGCAGAGAGCACCAACCATTTCTGAAAGAGCTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014927:ENSBTAT00000019872:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.364
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(4.4=70.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]