DreINT0109315 @ danRer10
Intron Retention
Gene
ENSDARG00000027500 | oxsr1b
Description
oxidative stress responsive 1b [Source:ZFIN;Acc:ZDB-GENE-040426-723]
Coordinates
chr24:19936170-19937678:-
Coord C1 exon
chr24:19937630-19937678
Coord A exon
chr24:19936236-19937629
Coord C2 exon
chr24:19936170-19936235
Length
1394 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CGTTCTGTTTTGTTTGGCAGAAT
3' ss Score
9.29
Exon sequences
Seq C1 exon
GCCGACATCATCAGAGCTCTTAAAACATAAATTCTTCCAGAAAGCCAAG
Seq A exon
GTAAGAGTCCTTACTAAAGAATGTTTTTTGCCTCTTTATTGTTTGATATTATTAATGCAAGTGTTGTTTGTACATTTACTCTCTCTGCTGTTTTTCTCTTACCACTATAACTTCTCTGTAGCATTGTTTGTTTTTTTTTTTTATTAACAATTGCTTCTGTTTCTCAATTGATTTGAATAATCAATCCTGCATCGATTCCAAGATTTTCAAAATGTTTCATTATTCTCTCTTAAATCGATTCTGAATTTTTAGCAGCAGATGGCTCTCTAGGCTAGTTTTTAACCGTTGTGTAAACACCGATTTCTATGAACATTCTTGTATTTCGCTTAAACTTTTTAATTGCTGTAAGCAGAGTACTGCTGTTTGTAAAGCATATAGCGCCATCTGCTGTTTAAAACTAAGCTCAGAGTTGATTAAAGAAAGAATAGCAACGCTTTTTAAAAATCGATTTAAAAATCGATCTAACATTTTATGTAATATCTTTATGTTTACATATTATGATTTATTTCAAGTATCATAATTATAATTATCTTTATATATTGTAAAGTTTTATCAAAGGTCACATCAGAGATGATAAAAATATTCGAAAACAATCTAATGTGAAATATAGTATATTATAAAGGGTGTGTTTTATATTTTCATTTTATTTGTTAAACCTGATAAGGGTGTAATGATCCTCCAGATGTCTATTAACATTAGTATTTGACAAAAAAAATAATGGTATAAGGATTAGAAACGACTTTGAGGTATATTGTTTTTAAAGTTATAGTTCATCCAAAAATGAAAATTCTTTTTGAGTTTCTTTCCTCTGTTAAAGTTATTTTGAAGAATGCTGGAAACTGAAAGTGATTAACATCTATTATATTTCTTTTTACTATGGAAGTCTATGACTGCTGGTTCCCAACGTTCTTCAAAATATCTTCTTATGTGGTCAGCCGAAAAAAAGTGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATCATTTTATTTATTTATTTATTTTTTTTTTGGTGAACTATCCCATTAATGAAAGCTAAGCTGTGTGTGTACAAAGCATCTGCATTCCCACATTTGCATGAATCATTGTTGAGTGGAGTCCAGAATTCCTCTTATTACTGGACCATCATGTTGGTGTCCAAACAAAAGCATGGATAAGTATCCCAGCATCCTCTCTTGTTGTCTGCCAAATGCAATTTCCCTCTCTATTTCTCTGAATCAGGAGTTAAGACCTCAGATGTTTCTGCACATGCCCAGTAGGGGGCTGAACTTGAATGTCAGCCCATGTTGTGAGTCAAACTTAATTGGTGGTTATTACCATAATTAAGACTAATATTTATTTTTTCGTTCTGTTTTGTTTGGCAG
Seq C2 exon
AATAATGAATTTCTGCAGGAGAAATTATTACACAGGGCACCTACAATTACGGAGAGAGCCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027500:ENSDART00000147004:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.636
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(4.4=70.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]