MmuINT0114260 @ mm10
Intron Retention
Gene
ENSMUSG00000036737 | Oxsr1
Description
oxidative-stress responsive 1 [Source:MGI Symbol;Acc:MGI:1917378]
Coordinates
chr9:119259202-119260098:-
Coord C1 exon
chr9:119260050-119260098
Coord A exon
chr9:119259268-119260049
Coord C2 exon
chr9:119259202-119259267
Length
782 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
AACTGAATTTTCTTTTCCAGAAT
3' ss Score
9.19
Exon sequences
Seq C1 exon
GCCAACAGCAGCAGAACTGTTGAGGCACAAATTTTTCCAGAAAGCAAAG
Seq A exon
GTGGGCATTCCAGCTTCTGAGTGTGTGTTTGTACAATGCTCCTCCCAGCTTCTGAGTGTGTGTTCATGCGATGCTCCTCCCAGCGTTGCTCCTGATGTCTTCCTAGTTGCATTTCTAAGATGATTACATTTGGAGATGGGATGGTGGATAAAATAATTGCTAAAGGTATTATGTATATAATGTGAGCTGGAGTGAAATGCTTTCCACATAAGCATGGCGACATAAATTTGATCCCTAGAACCCACTATTTCCACAAAAATAATAAGGTGTGGAAACTTGGCTTATAATTCCCTAACTGGGGAAGTGGACACAGATGGATCCCTAGAGCTCCTTGTATAGTAAGCCTTGGCTAATAGGTGGCTGCTGGGCACAGTACACACACATGCATATACATCTGTATACACATGAACCTTCTTTTTCCTATTGTAAAAGCAGTCTGTGAAGGTTGAGCTTTCATTTCAAGGCTTAGTGCTAAACTACCAAATGCCTCATATGTCAACTTAATGCATTAGTGTATTTGGTAATGTAGGATCAAACAAAGACAAAGAATGTACAGTAAAGTGAGCTTTTCATAGAAAACGGTTTCTAGTACATATTGAAGGTTTGTCTATAGGTGAAAAATAATGGAAGTGTTGTATAAAAACCTTTGGAGTGGAAACCCCTCATCTCTTCACAGTGCACTTTACTTACCACAGTTAACTGTGACTGACATCTGTGTCACATGGTGGACTCACTAAAATGTTCCGATAACTGACTTTCTGAAACTGAATTTTCTTTTCCAG
Seq C2 exon
AATAAAGAATTTCTTCAAGAAAAAATACTCCAGAGAGCACCTACCATTTCTGAAAGATCTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036737:ENSMUST00000040853:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.187 A=NA C2=0.409
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(4.4=70.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types