RnoINT0106343 @ rn6
Intron Retention
Gene
ENSRNOG00000013136 | Oxsr1
Description
oxidative-stress responsive 1 [Source:RGD Symbol;Acc:1310466]
Coordinates
chr8:127948960-127949797:-
Coord C1 exon
chr8:127949749-127949797
Coord A exon
chr8:127949026-127949748
Coord C2 exon
chr8:127948960-127949025
Length
723 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
AACTGGCTTTTCTTTTCCAGAAT
3' ss Score
9.43
Exon sequences
Seq C1 exon
ACCAACAGCAGCAGAACTGTTGAGGCACAAGTTTTTCCAGAAGGCAAAG
Seq A exon
GTGGGCATTCATATGGCGTTCCTCTGTTCCTCTGTTCCTCACGCCGTGATCATGGCTGCAGTTTTTACGATGATTACATTTGGAGACATGATGGTAGATAAAATTACTACAGGTAGTAAATATGTAGTCTTGGGTAAGTAAGATAACTTGTGTTGGGAGCTGGGGAGAAATGCTTTCCACATAAGCATGAGGGCATAAATAGGATCCCTAGAGTCCACAGAATTAGTCAGGAGTGGAAACTTGGCTTATACTTCCCTACCTGGGGGAGTGGACCCGTGGGTCCCTAGAGCTCCTTGGTTGGTAAGATGTAGGCTAACTGGTGGCCTCAAGTCTCAGCAAGAGATTTTATCTTAAACAAGGTGGATGTGACCGTAGCACACACACATGCACATCTGTATCCATGTGATTTAGTGCTGAACTACCAAATGCCTCATATCCCAACCTAATGCATTAGCATGTTTGGCAATGTCGGACCTAACGTAGACATAGAGTGCACAGGAAAGCGAGCGAGCTTTTCATGGGAAACGGTTCCTAGCACACACTGAGGGTGAGTCAGTGAACAATAATGGACGTGCTGGATAAAAACCTCTGCAGTGGAAACCCTTCTTCTCCTACAGAACACTTTACTTACCACATACTAACTGTGACTGTCATCTGGGTCACATGTTTGTTCAATAAAAAGTTCTGATAACTGACTTTCTGAAACTGGCTTTTCTTTTCCAG
Seq C2 exon
AATAAAGAATTTCTTCAAGAAAAAATACTACAGAGAGCACCTACCATCTCTGAAAGATCTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013136:ENSRNOT00000018056:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.364
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(4.4=70.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]