HsaINT0119206 @ hg19
Intron Retention
Gene
ENSG00000172939 | OXSR1
Description
oxidative-stress responsive 1 [Source:HGNC Symbol;Acc:8508]
Coordinates
chr3:38271178-38271921:+
Coord C1 exon
chr3:38271178-38271226
Coord A exon
chr3:38271227-38271855
Coord C2 exon
chr3:38271856-38271921
Length
629 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
TACTTACTTTTCCTCTCCAGAAT
3' ss Score
9.19
Exon sequences
Seq C1 exon
ACCAACAGCAGCAGAACTATTAAGGCACAAATTTTTCCAGAAAGCAAAG
Seq A exon
GTAGGAAATTCCAGCTTTTGATTATGTGTGTTCATAGGATGCTCCTCAATTACTCAGATTATGTTCAGTGCTTAGAAGTTGGATGATTATGTTTGGAAAAATGATGGTAGATAAAATAATTGCAGAAAGCACTATGTATACAGTCTTTGATAATTAAGATAATTGCTTCAGAATTTAGTAAATCCGTTTTTAAATATTAGGTTAAACTGATCATAGGAACAATGATTATTAAATTTTGCCATTATAAATATAATTTGTGAAAAATACCGAACTCTGGTTTTAAGGTTTACTACTGAATTTGTAAACATCTCATTTCCCAAATATATCAGATAGTAGGATGTTACTGTAGTTGGAAATGTAGGACCATGATCTCAAAGAACATACAGTACAGCAAACTCTTCATAGACAGTGGTTCATACAGTGTACTACATCTTAATTTTCTGCCTCAATTTATGAAACTGTGGTAGTAACATACTAAAGGAGCTTCAGAGTGAAAGAATGAAAGTTTTTCTCACACTTCATTACAGAACAGTTACTATATCACATTTTGATTATGGTGAACTTTTTTGTGGGTTTTTTTTGGTACCTTAAAAACTTGTAAGAACAAAATACTTACTTTTCCTCTCCAG
Seq C2 exon
AATAAAGAATTTCTTCAAGAAAAAACATTGCAGAGAGCACCAACCATTTCTGAAAGAGCAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172939-OXSR1:NM_005109:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.659
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(4.4=70.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)