GgaINT0091651 @ galGal3
Intron Retention
Gene
ENSGALG00000005979 | OXSR1
Description
NA
Coordinates
chr2:4828802-4830472:+
Coord C1 exon
chr2:4828802-4828850
Coord A exon
chr2:4828851-4830406
Coord C2 exon
chr2:4830407-4830472
Length
1556 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TTCTTTTCTTGCTTTTGCAGAAT
3' ss Score
12.04
Exon sequences
Seq C1 exon
ACCTACAGCAGCAGAACTTTTAAGACACAAATTTTTCACGAAAGCAAAG
Seq A exon
GTAAGGAAACATTTCTGAAACTGATCTGTGCAGGGGCTGTAGAGAGGACTGGTAAAAGGATGGTGAAAGCTCAGCTGTTCCACTGAGGGCCAGAATAGCTGAATGAGTTGAATGGGTCATTGTGAACAGACATAATGAAATCTCTCTTCTGTACCTCCTTGTGTTTGCCACTATTAGGTAAATTATTTAGAAATTCTTCAGTGTTTAAATGTCTTTCAGTGGGTTTGAGGATTTTTCCTTCCCTTGTAATGGTGCTGGTGCCGTTCTGGCTGCATGTCCAGCCATAAAGGTGTCTGGCATTAAATGGAGCTTATATTTATATTTTAGTAAACTCTATAACCTGTCTGCAAAAGTCTGTATGCAAAACAGTGAATGAGGCCCCCACTGTGTGAAAGGTTGCCTCATGCTATAGAGACAGAAAGTGAATATCTTGTGATATAAAATAACAGGAAATTCCCATTTGTAACTATGAAACAAACTGCATGAATGTATATCCATTGGTACCTGATAGAGCATTGAGGTGTCAGCAATTAATGACAGTAGGTCTCATCTCCCAGATTAAGACACATAGAGTAGCCACATCAAGTTTTTTTTGTTGTCAGAATGGGATTTTAGGCAACTGCATTGTTTGCATCTTGTTTACTGAGAGCACACTTGGTGTCCAAAGTGACAGGGCGATGGTTTACACATTGCTGACCTTTCTGTGCTTGGTTGATGCCAGTTTTAGTTCATGTTGTACTTCATTGTGCTTAAAATTGCTTTCATGCTTTCATTAAACTGCTACAGAGTAAAGTATTAGCATACGCAGTGATAGAAAATTAACATGATTGTAAATGAGGCAATACTTAAACCCAGAGGGAATAATGCATGCCTGTTAGTGCTCAATGTTAAATTGCCTTCAGCCGTTGGCCTCTGCCAAACTGACAGCTGTAACTTGAGGACAAGAAAGTCCAACTTCTACACGCTTACATTGAACCAAATGTAAGGATAGTTTATATAATGTATGTTTTGATAATTCTGAAAGCCATGTATCAAAATGTGGCAGTGTATGTCTTAAGGAAGTGCAGTGCTGTAGATCGTTACAGCAGTTTCCCAGTATTTAACCTGCTGTGATTGCTGCCTTTTGCTGCTTCTCCACACATCACACGTTGCAAATTTTTCCAGCCACTCAAACTGCTGCTGCCCCAATACCTGGGCCCTGTTATGCCTGCGGGTAGGGATTCCCATGTCCTGGCCTGTCAGACTTCTGAGACGTGCCATTGGTAGGACAGGCATAGGGGTAGAGCAGGCAGACAGGTAAGAAACAGCAAAGTGGCTAGATCCAAGTGCTGTAGCACCTGCAAAGAGAACATAAAATATCTCAACAAGATATCAGATGCTGCTATGTAGTGAGTGCAGCTGTGTTCTCCAATAAATCAGACAGAATTTTGTTCAGTTCCTTGGTTGTTAGTTTCTTATCATCTGCATAAGGAAAATGCAGCTACTAATTTAGAAGGAATCAAAGGGTATTTCCAGCAGTGTAAATGTTTAGTTCTTTTCTTTTCTTGCTTTTGCAG
Seq C2 exon
AATAAAGAGTTCTTACAAGAGAAGATGTTACAGAGAGCACCAACAATTACTGAAAGATCCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005979:ENSGALT00000009616:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.176 A=NA C2=0.727
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(4.4=70.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]