BtaINT0113450 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011922 | PLEC
Description
plectin [Source:HGNC Symbol;Acc:HGNC:9069]
Coordinates
chr14:2077217-2077558:+
Coord C1 exon
chr14:2077217-2077300
Coord A exon
chr14:2077301-2077453
Coord C2 exon
chr14:2077454-2077558
Length
153 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
GCATTGGTGTGTCTCTGCAGGAC
3' ss Score
10.13
Exon sequences
Seq C1 exon
GCCCTGCTGGAAGAGATTGAACGCCATGCTGAAAAGGTAGAGGAGTGCCAGAGGTTCGCGAAGCAGTACATCAACGCCATCAAG
Seq A exon
GTGAGGCTCTGTGGCCTCGGGGCCCGGGGAACAAGGCAGTGGGGGCGACCTCTGAGGGCCCCCCCGCCAAGGCCACGCTGGGCAAAGCCTGCAGGCAGTTTCAGGGGCGGGGTGGGGCGGGCAGAGCTGGCAGGCATTGGTGTGTCTCTGCAG
Seq C2 exon
GACTACGAGCTTCAGCTGGTCACGTACAAGGCACAGCTGGAGCCAGTGGCCTCGCCGGCCAAGAAGCCCAAGGTCCAGTCGGGGTCCGAGAGCGTCATCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011922:ENSBTAT00000015828:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.321
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(20.9=100)
A:
NA
C2:
PF0043516=Spectrin=FE(26.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGCTGGAAGAGATTGAA
R:
CTCCTGGATGACGCTCTCGG
Band lengths:
189-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development