HsaINT0127083 @ hg38
Intron Retention
Gene
ENSG00000178209 | PLEC
Description
plectin [Source:HGNC Symbol;Acc:HGNC:9069]
Coordinates
chr8:143926977-143927335:-
Coord C1 exon
chr8:143927252-143927335
Coord A exon
chr8:143927082-143927251
Coord C2 exon
chr8:143926977-143927081
Length
170 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
ACCGCAGTGCATTGCCACAGGAC
3' ss Score
4.3
Exon sequences
Seq C1 exon
GCCCTGCTGGAGGAGATCGAGCGCCACGGCGAGAAGGTCGAGGAGTGCCAGAGGTTTGCGAAACAGTACATCAACGCCATCAAG
Seq A exon
GTGAGGCCCAGCCGCCTGCACCAGGCCCCAAGTCCGGGACCGTTGCCAGGATGATGGCGGGCTTTCCCTGAGCCTGGGCCATGCCAGGGAAAGCCCATGTGAGGGTTTAGGGGCTGGGCAGGGGCCATCGGAGGGCAGAGCTGGTGGCTGACCGCAGTGCATTGCCACAG
Seq C2 exon
GACTATGAACTCCAGCTGGTGACGTACAAGGCGCAGCTTGAGCCGGTGGCCTCCCCGGCCAAGAAGCCCAAGGTCCAGTCGGGATCAGAGAGTGTCATCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178209:ENST00000322810:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.325
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(30.7=100)
A:
NA
C2:
PF0043516=Spectrin=PD(14.8=37.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGCTGGAGGAGATCGAG
R:
TCCTGGATGACACTCTCTGATCC
Band lengths:
187-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development