HsaINT0127083 @ hg19
Intron Retention
Gene
ENSG00000178209 | PLEC
Description
plectin [Source:HGNC Symbol;Acc:9069]
Coordinates
chr8:145001145-145001503:-
Coord C1 exon
chr8:145001420-145001503
Coord A exon
chr8:145001250-145001419
Coord C2 exon
chr8:145001145-145001249
Length
170 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
ACCGCAGTGCATTGCCACAGGAC
3' ss Score
4.3
Exon sequences
Seq C1 exon
GCCCTGCTGGAGGAGATCGAGCGCCACGGCGAGAAGGTCGAGGAGTGCCAGAGGTTTGCGAAACAGTACATCAACGCCATCAAG
Seq A exon
GTGAGGCCCAGCCGCCTGCACCAGGCCCCAAGTCCGGGACCGTTGCCAGGATGATGGCGGGCTTTCCCTGAGCCTGGGCCATGCCAGGGAAAGCCCATGTGAGGGTTTAGGGGCTGGGCAGGGGCCATCGGAGGGCAGAGCTGGTGGCTGACCGCAGTGCATTGCCACAG
Seq C2 exon
GACTATGAACTCCAGCTGGTGACGTACAAGGCGCAGCTTGAGCCGGTGGCCTCCCCGGCCAAGAAGCCCAAGGTCCAGTCGGGATCAGAGAGTGTCATCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178209-PLEC:NM_201378:28
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.343
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGCTGGAGGAGATCGAG
R:
TCCTGGATGACACTCTCTGATCC
Band lengths:
187-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)