DreINT0115629 @ danRer10
Intron Retention
Gene
ENSDARG00000062590 | pleca
Description
plectin a [Source:ZFIN;Acc:ZDB-GENE-030131-8984]
Coordinates
chr19:22839713-22839985:-
Coord C1 exon
chr19:22839902-22839985
Coord A exon
chr19:22839818-22839901
Coord C2 exon
chr19:22839713-22839817
Length
84 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
GCCTGAATGTTCTCCTCCAGGAT
3' ss Score
9.44
Exon sequences
Seq C1 exon
AAACTTCTCGAGGAGATTGAGAAAAACAAGGACAAGGTAGAGGACTGCCAGAAATTTGCTAAAGGATACATCGATGCCATAAAG
Seq A exon
GTGTGTATGAACACTGTCTCATCCATATTTTAGTCAAATCCAAATGATACATGAACTGCGGTCTGCCTGAATGTTCTCCTCCAG
Seq C2 exon
GATTATGAGCTCCAGCTGGTGACTTATAAAGCGCTCGTGGAACCCATCGCCTCCCCTCTGAAGAAGGCCAAAATGGAGTCTGCTTCTGATGACATCATCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062590:ENSDART00000090679:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCGAGGAGATTGAGAAAAACAAGG
R:
CAGAAGCAGACTCCATTTTGGC
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]