RnoINT0113117 @ rn6
Intron Retention
Gene
ENSRNOG00000023781 | Plec
Description
plectin [Source:RGD Symbol;Acc:621649]
Coordinates
chr7:117242408-117242767:-
Coord C1 exon
chr7:117242684-117242767
Coord A exon
chr7:117242513-117242683
Coord C2 exon
chr7:117242408-117242512
Length
171 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
ACTACAGTGTGTATCTATAGGAC
3' ss Score
6.14
Exon sequences
Seq C1 exon
GCCCTGCTGGAGGAGATTGAGCGCCATGGTGAGAAGGTTGAGGAGTGCCAGAAGTTTGCTAAGCAGTACATCAATGCAATCAAG
Seq A exon
GTGAGGCCTCTCAGCTGGCAGCTCTAAACCTCAGGCGGGAGCAGGCATTGGACTCCTGCGTGGCCGTCCCAAGCTTGGACTGTGCCAAAGAAAGCCTGTGAGGCAGCCTGGGGGTCAGGCCCAGGCAACCAGAGTCTAGAGCAGGCAGCTGACTACAGTGTGTATCTATAG
Seq C2 exon
GACTATGAGCTCCAGCTGATCACCTACAAGGCTCAGCTTGAACCTGTGGCCTCCCCCGCCAAGAAGCCCAAGGTTCAGTCTGGATCGGAGAGCGTCATCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023781:ENSRNOT00000006311:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.314
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGCTGGAGGAGATTGAGC
R:
CCTGGATGACGCTCTCCGATC
Band lengths:
186-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]