BtaINT0114783 @ bosTau6
Intron Retention
Gene
ENSBTAG00000032137 | PNPLA6
Description
neuropathy target esterase [Source:RefSeq peptide;Acc:NP_001070015]
Coordinates
chr7:17629976-17630716:+
Coord C1 exon
chr7:17629976-17630059
Coord A exon
chr7:17630060-17630606
Coord C2 exon
chr7:17630607-17630716
Length
547 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGG
5' ss Score
5.63
3' ss Seq
TTGCCCCTCATCCACCGCAGGCT
3' ss Score
9.1
Exon sequences
Seq C1 exon
GGGACCCAGTGAAGCCCACATCCCTGGAAACCTCCTCAGCCCCCTTGCTGAGTCGCTGCATCTCCATGCCAGTGGATATCTCAG
Seq A exon
GTTTGGGGCACCAGGTGGAGCTGGGAGAGGCTATCAAATATCATTTATTTACTTATTTTTGCCTGCAGTGGGTCTTCGTTGCTGTGCAAGGGGGCTACTCTTCATTGTGGTGCACGGGCTTCTCAGGCAGTGGCGTCTCTTATTGCAAAGCATGGGCTCTAGAGTGTGCACTCAGTAGTTGTAACTTAGTAGTTACTCAGAGGCATGTGGGATCTTCCTGGACCAGGAATAGTACCCTGCATTGGCAGGAGGATTCTTAACCACTGGGTCACCAGGGAAGTCCATCTGCCTCCCAGTCTTGATTTTTCTCATCCACGAAATAGGAATATTGGGAGCATTTCTCATGTCTTTTTTTCTGTGGGTCCTTGTTGAGATGGTGCTCTCCGCACTGTAGTGAGAAGGGTTGCAAGGGAAAGAGAGAGGCGATGGATTAGTCCATGTCTTTCCGGCTGCTGCCCGGGATAACGTTATGTAGATAGTGTTTGCTTAGATTCCCACTATGGTTACTCTGATCTTTATTGCATTTATTGCCCCTCATCCACCGCAG
Seq C2 exon
GCTTGCAGGGTGGGCCCCGCTCAGACTTCGACATGGCATATGAACGGGGCCGAATCTCTGTGTCCCTGCAAGAAGAGGCCTCAGGAGGGTTCCAGGCAGCCTCAGCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032137:ENSBTAT00000007351:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.448 A=NA C2=0.919
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACCCAGTGAAGCCCA
R:
GCTGAGGCTGCCTGGAAC
Band lengths:
190-737
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]