HsaINT0128563 @ hg38
Intron Retention
Gene
ENSG00000032444 | PNPLA6
Description
patatin like phospholipase domain containing 6 [Source:HGNC Symbol;Acc:HGNC:16268]
Coordinates
chr19:7541984-7542670:+
Coord C1 exon
chr19:7541984-7542067
Coord A exon
chr19:7542068-7542560
Coord C2 exon
chr19:7542561-7542670
Length
493 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGG
5' ss Score
5.63
3' ss Seq
GCCCCCCTGCCTGCCTGCAGGCT
3' ss Score
10
Exon sequences
Seq C1 exon
GGGACCCTGTGAAGCCCACATCCCTGGAAACCCCCTCGGCCCCTCTGCTGAGCCGCTGCGTCTCCATGCCAGGGGACATCTCAG
Seq A exon
GTTTGGAGCACTGGGTCTGCGGGGAGGGCCATGGAGCTTCCAGGTTTGAATCCAGGTCCACCGCCTGCCTGTCTTGATTGTTTTAATCTGCGAAATGGGAACACTGCCAGTACTTCCCCAGGCACTGTTTTGTAGATATTCATTGAGATAGTGCTTCTCCCACCTGTTAAGAGGGATTCAGAGGGAGAGTGCAGGCGTTGATTAGTCATGTCTGCTACAGCAGTGGCCCATGGCACATTGGTATCCATTGGTCTCAGACTGCAACTGTGGTTACTCTCATCTTTTTCTTTTCTTTTGAGACCTGTCTCCCAGGCTAGAGTGCAGTGGTGCTGTCATAGCTCACTGCAGCCTCGAACTCCTATGCTCAAGTGATCCTCCAGCCCCAGCCTCCCAAATAGCTGGAACTACAGGCCTGCACCACTACACCTGGCTCATTTTTTAAAAATCTTACTCTCATCTTTATGGTTTTTGTTGCCCCCCTGCCTGCCTGCAG
Seq C2 exon
GCTTGCAGGGTGGCCCCCGCTCCGACTTCGACATGGCCTATGAGCGTGGCCGGATCTCCGTGTCCCTGCAGGAAGAGGCCTCCGGGGGGTCCCTGGCAGCCCCCGCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000032444:ENST00000221249:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.993 A=NA C2=0.982
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development