GgaINT0004574 @ galGal3
Intron Retention
Gene
ENSGALG00000007881 | PNPLA6
Description
NA
Coordinates
chrUn_random:60651615-60652236:+
Coord C1 exon
chrUn_random:60651615-60651698
Coord A exon
chrUn_random:60651699-60652129
Coord C2 exon
chrUn_random:60652130-60652236
Length
431 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
3' ss Seq
CCCTCCCCGGTGGTACACAGGCA
3' ss Score
5.17
Exon sequences
Seq C1 exon
TTGAGCCACTGAAAGCCGGAGTTCTGGATGCCCCTGCACCACCACTGCTGAGCCGCTGCATCTCCATGCCAGTGGATATCTCTG
Seq A exon
GTAGGTGGGGGGCTTGGAGGAAAGAGAGGGTTCCTTATCCCTGTGCATCGCCCCCCAGGGTACTGTGTCACTTGCTGAGGGTTGTGCATCCTCCCTTGGGTCACACATTTCCCCATGGGACCGTGCGTCCTCCATAGGGTCACACACCCCCCCATGGGACCACGCATCCTCCATTGGGTCATACATCCCTCCGAGGGCTTGTGCATCCCTCTCTGGGGCTGTCCGTCCTCCATGGGGTGCTGTGTTCCCCCGTGGAGTTCTCCGTCCCCCATGGAGTTCTCCATCCTCCATATGGGGTTGTGCATCCCCTCTGGGTCGTGCGTTCCCCCCTTCCTCGGCCTCATGCATGCCTCCCCCCAGTTCTCCCACCCCCATGTTTGCCCACCTTGTGCTGCTGGTGACCACCTGGTCCCCTCCCCGGTGGTACACAG
Seq C2 exon
GCATCCAGAAGGGTCCCCGCTCTGACTTTGACATGGCCTACGAGCGCGGACGCATCTCAGTATCGCTGCAGGAGGACAGCACCAGCCCCCTGGCTGCCTTCTCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007881:ENSGALT00000012800:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=NA C2=0.278
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGCCACTGAAAGCCGGAG
R:
CGAGAGAAGGCAGCCAGGG
Band lengths:
190-621
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]