BtaINT0115662 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010805 | POMT1
Description
Bos taurus protein-O-mannosyltransferase 1 (POMT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001080330]
Coordinates
chr11:101663103-101663830:+
Coord C1 exon
chr11:101663103-101663200
Coord A exon
chr11:101663201-101663716
Coord C2 exon
chr11:101663717-101663830
Length
516 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACA
5' ss Score
5.49
3' ss Seq
GTGGCCTCTGTGGTCTGCAGTGG
3' ss Score
5.6
Exon sequences
Seq C1 exon
GCCAGGAGCAGAAGGAGAGGGAGCTGGAGCTGCACTCCCCCACCCAGGTGGACATCAGCAGGAACCTCAGCTTCATGGCCAGATTCTCCGAGCTTCAG
Seq A exon
GTGACAGGCGGGCGGACGGGTGGCTGACCTTGCCTTTTGCAGGGAGGGCCACGTGGTCTGTCCAGTGTCAGCCTTCTAACTGGGACCTGCCTCGGCAGGGAGGGCCATTGCCCTCTGTCCTCTGTCCATGTCATGCCCAGCACCATCAACCCCCAGCCTCCCGGCCTTCCCGCTGTGTGGCTTTGCCGGCAGTAACTGTCAGGAGCCAAGGAGACATGCAGCAGTGTGGCACTGCTCCCAGGTCAGGTCGATACGGCATAGCTCCAGGGAAGTCAGAACCGGGCACTCAGCATCCCCAGCGTCAAGGCGCCCTTACCGCCCCATCCCATCCCTTAATTCACAAACTGGAACCCAGGAGAGGCGCCTCCTGGGCTGCCTCTGCAGGTGACCTGAGTGAACTTGAGGTTGGCCGCCCCCGTGAAAGGGGCAGCGGTTTACTCCGCCCCCTGGCAGATCCCTTGGCTGTGAAGGGCGTCTGGCTGTCCAGTGACTCCCAGTGGCCTCTGTGGTCTGCAG
Seq C2 exon
TGGCGGATGCTGACGGTGAGAAGTGACGATTCGGAACACAAGTACAGCTCCACGCCGCTGGACTGGGTCATGCTGGACACCAACATCGCTTACTGGCTGCACCCCAGGACCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010805:ENSBTAT00000014315:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.242 A=NA C2=0.024
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGCAGAAGGAGAGGGAG
R:
ACTGGTCCTGGGGTGCAG
Band lengths:
210-726
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development