RnoINT0115404 @ rn6
Intron Retention
Gene
ENSRNOG00000010477 | Pomt1
Description
protein-O-mannosyltransferase 1 [Source:RGD Symbol;Acc:620078]
Coordinates
chr3:11268029-11268738:+
Coord C1 exon
chr3:11268029-11268126
Coord A exon
chr3:11268127-11268624
Coord C2 exon
chr3:11268625-11268738
Length
498 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACA
5' ss Score
5.49
3' ss Seq
TGTGCTTTATTCTGTGGCAGTGG
3' ss Score
6.56
Exon sequences
Seq C1 exon
GCCATGAGCAGAAGGAGAGGGAGCTGGAGCTCCACTCACCCACGCAGCATGATATCAGCAGGAACCTCAGCTTCATGGCCAGATTCTCGGAGTTACAG
Seq A exon
GTGACAAGTGACTGGTGGGACGTCCGTCCTTGCGTAGTGGGAGCTAACTTCTGTCCATGAAGACACGGTGTGCTGCTGAGCCCTGCAGGTCAAAGTCCTTGGACTTGGAACTTGAGACCGCAGCACCTAGTAGGTCAGGGCCAAGGAGGTGCTGTACCAGTGTGACATTGCAATAAAGTCAGGGTGTCTTCAGGCCTCCCACCAGGTCAAAATGGCCACATTCAACCAGCAGAGCCCTGGGTAAGTCGGGCAGACACTCAAGTCCATGGCACGATTCCCATCACAGTCTGAAGGGCAGATGCTGGAATCCGTGCAGTCAGGTCCCCAAACCAACAGCCCAGGTTAGCTTGCAATGCCCCTACCTGCAGCACTTGCTGACTGAACTTGGACTGGGCAGTTGGCATACAAGGAACAGTAGTAGTGTGGTGATGCGCCATGGCATCATGGCGGCTAAAGGCAGTGAGCACCCTCTGCAACCTGTGCTTTATTCTGTGGCAG
Seq C2 exon
TGGAAGATGCTGACGCTGAAGAATGAGGACTTAGAACACCAGTACAGCTCCACCCCGCTGGAGTGGCTCACGCTGGACACCAACATTGCCTATTGGCTGCACCCCAGGACCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010477:ENSRNOT00000015214:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.303 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGAGCAGAAGGAGAGGGA
R:
TCCTGGGGTGCAGCCAATAG
Band lengths:
206-704
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]