GgaINT0124525 @ galGal3
Intron Retention
Gene
ENSGALG00000003757 | POMT1
Description
NA
Coordinates
chr17:6859028-6859742:+
Coord C1 exon
chr17:6859028-6859125
Coord A exon
chr17:6859126-6859628
Coord C2 exon
chr17:6859629-6859742
Length
503 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
CTGTTTACTTTTTTTTCCAGTGG
3' ss Score
9.24
Exon sequences
Seq C1 exon
GCCAAGAGCAAAAAGAGAGGGAAGTGGAACTCCACTCTCCCACACGGATGGATATAAGTAAAAACCTAAGCTTCATGGCAAAGTTCACAGAATTGCAG
Seq A exon
GTAAATGTGTTTCTTTCATCCTTTCTTTTGTTGCAGGGCAGGAACCAAACACTTCTGCAGACTCTGAGACTGAGAGTTCATTGTTTCTTCCTTGCTGATAGAGTAATTTAGCTTCCTTAGTGAAGTAAAAATCTGAATGCTCTTAAGCATTAGATAGCAGCACAACTGTGCTATTGAGTGATGAGTACCCAAGTGACCGTGTAACAAGAGAGAGAAGGAAGAGCAGCTGGGCATGCAGAAGTTCTCTGAAACTGAATTGCAGTGTTGTTTTGTCAGCAGTCTCAATGCCCCTTACTGACATTTCAGAATTTCACTCAGAAAAGTGCACGATCTAAGGACAAACAAAACCATTTTATTGATAAACTTCCAGTCTTAATTACAAACAGTCTTTCTCCACACTCAGGTTGAGAACATAACATCTTACATCTGAAGCTGTTCATCTATGCCTGCTATCTCAGCCATTGCTCTCATTCTGAAAACCTTCTGTTTACTTTTTTTTCCAG
Seq C2 exon
TGGAAGATACTCACATTGAAAAATGAAGACACAGAACATAAGTACAGCTCCTCTGCTCTTGACTGGATCACAATGGACACGAATATTGCATACTGGCTACATCCAACCTCTGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003757:ENSGALT00000005965:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAGAGCAAAAAGAGAGGGA
R:
CAGAGGTTGGATGTAGCCAGT
Band lengths:
210-713
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]