GgaINT0124525 @ galGal4
Intron Retention
Gene
ENSGALG00000003757 | POMT1
Description
protein O-mannosyl-transferase 1 [Source:RefSeq peptide;Acc:NP_001025856]
Coordinates
chr17:6231492-6232206:+
Coord C1 exon
chr17:6231492-6231589
Coord A exon
chr17:6231590-6232092
Coord C2 exon
chr17:6232093-6232206
Length
503 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
CTGTTTACTTTTTTTTCCAGTGG
3' ss Score
9.24
Exon sequences
Seq C1 exon
GCCAAGAGCAAAAAGAGAGGGAAGTGGAACTCCACTCTCCCACACGGATGGATATAAGTAAAAACCTAAGCTTCATGGCAAAGTTCACAGAATTGCAG
Seq A exon
GTAAATGTGTTTCTTTCATCCTTTCTTTTGTTGCAGGGCAGGAACCAAACACTTCTGCAGACTCTGAGACTGAGAGTTCATTGTTTCTTCCTTGCTGATAGAGTAATTTAGCTTCCTTAGTGAAGTAAAAATCTGAATGCTCTTAAGCATTAGATAGCAGCACAACTGTGCTATTGAGTGATGAGTACCCAAGTGACCGTGTAACAAGAGAGAGAAGGAAGAGCAGCTGGGCATGCAGAAGTTCTCTGAAACTGAATTGCAGTGTTGTTTTGTCAGCAGTCTCAATGCCCCTTACTGACATTTCAGAATTTCACTCAGAAAAGTGCACGATCTAAGGACAAACAAAACCATTTTATTGATAAACTTCCAGTCTTAATTACAAACAGTCTTTCTCCACACTCAGGTTGAGAACATAACATCTTACATCTGAAGCTGTTCATCTATGCCTGCTATCTCAGCCATTGCTCTCATTCTGAAAACCTTCTGTTTACTTTTTTTTCCAG
Seq C2 exon
TGGAAGATACTCACATTGAAAAATGAAGACACAGAACATAAGTACAGCTCCTCTGCTCTTGACTGGATCACAATGGACACGAATATTGCATACTGGCTACATCCAACCTCTGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003757:ENSGALT00000005964:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAGAGCAAAAAGAGAGGGA
R:
CAGAGGTTGGATGTAGCCAGT
Band lengths:
210-713
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]