DreINT0117586 @ danRer10
Intron Retention
Gene
ENSDARG00000067670 | pomt1
Description
protein-O-mannosyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-060929-966]
Coordinates
chr5:50478119-50478926:+
Coord C1 exon
chr5:50478119-50478216
Coord A exon
chr5:50478217-50478812
Coord C2 exon
chr5:50478813-50478926
Length
596 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATT
5' ss Score
5.95
3' ss Seq
CTAATGTGTTTGATTACCAGTGG
3' ss Score
5.37
Exon sequences
Seq C1 exon
GTCAGGAACCAAAGGAAAGGGAGTTGGAGCTGAAGTCTCCTACTCACAGCGATGTCAACAAAAATCTCACATTTATGGCCAAATTTCTGGAACTGCAG
Seq A exon
GTGATTATTGAAGTGGTCTGCTTTACTGTATGTTGCACTTTCAACTTTATTTAATATGTAATTTAGTTACAAAGTTAATCCAGAGGCTGTTTTTTTTTTTCCTTTTTCTTAACTTTAATGCCTTAAGTGTAGTCCAATTTTTTTTCCAAGCTACAATAGACGAGGAGTTTAAACTGAGAAGGCTCTAAAGTGCGTGCGAAAGTTTTGTTTTGTGTTGCTGGAGTAAGGCTGTGTGTTTTCCCCCTCCCCCTGAGCTAAGCATTTTTTCCTGTTGTTGTCAATGGAAACAGTGTTTAAAACCTTGGCAGTATGGGATTTTACATTCAGCACTGAGCGCTCTGTGTTTTTTTTAAAGCTTTGATGGTTGAATCATTTACAGCTAAGTGTTTTTTGCACAGAGGTGGACATAAGGCTCCACCCTCTTTTGGAAAGGATGGAGAGCAGCAGTTCATTTGCATTTAAAGTGACACATGAATAAGTGTTTGCTTCCACCATAAAACAAAAAGGATCTTATGTCTTTTTGACATTTTTGTTTAAAAAAATCCAGTTAAAACTGGTTTCATATAGTGAACTAACCTAATGTGTTTGATTACCAG
Seq C2 exon
TGGAAGATGCTGACAGTAAAGAACGAAGAGTCAGAGCACAAATATAGTTCATCACCTCTTGAATGGATCACAATGGACACCAACATTGCATATTGGCTTCATCCTTCAAGTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067670:ENSDART00000092002:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.302 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGGAACCAAAGGAAAGGGA
R:
TGAAGGATGAAGCCAATATGCA
Band lengths:
206-802
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]