BtaINT0120954 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018928 | QARS
Description
glutamine--tRNA ligase [Source:RefSeq peptide;Acc:NP_001029640]
Coordinates
chr22:51490271-51490505:+
Coord C1 exon
chr22:51490271-51490356
Coord A exon
chr22:51490357-51490412
Coord C2 exon
chr22:51490413-51490505
Length
56 bp
Sequences
Splice sites
5' ss Seq
AGCCTCTTG
5' ss Score
-25.73
3' ss Seq
CTCCACCTTCCTAACTCTAGGAG
3' ss Score
8.57
Exon sequences
Seq C1 exon
GGGTCCGGTTTGCTCCTGAGCTCAGTCTGAGGACCCATCATCCCTTCTTCAAACCAGTCTCTGCCAGACATAGGGGTGGAAGAAGC
Seq A exon
CTCTTGTGTTTCTGACCTTTGTAGCCTCTTGTGTTTCTCCACCTTCCTAACTCTAG
Seq C2 exon
GAGCCAGAGCCAGGCTATAAGCGCCTGGCATGGGGCCAGCCCGTGGGCCTGAGGCATACAGGCTACGTCATCGAGCTGCAGCATGTTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018928:ENSBTAT00000025191:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.276 A=NA C2=0.161
Domain overlap (PFAM):
C1:
PF0395013=tRNA-synt_1c_C=FE(15.0=100)
A:
NA
C2:
PF0395013=tRNA-synt_1c_C=FE(16.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCAGTCTGAGGACCCATC
R:
TGACGTAGCCTGTATGCCTCA
Band lengths:
138-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]