GgaINT0022069 @ galGal4
Intron Retention
Gene
ENSGALG00000006853 | QARS
Description
glutaminyl-tRNA synthetase [Source:RefSeq peptide;Acc:NP_001012800]
Coordinates
chr12:11585234-11585557:+
Coord C1 exon
chr12:11585234-11585338
Coord A exon
chr12:11585339-11585464
Coord C2 exon
chr12:11585465-11585557
Length
126 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
AGCAGTGCATCCTCTCGCAGGAG
3' ss Score
5.89
Exon sequences
Seq C1 exon
GCAATCGATGTCGTCATGCCCAACTTTCCTGCTGATGAGAGCCGGGGCTTCCACAAAGTGCCCTTCCAGTCCGTCGTCTACATCGAGGAGACTGACTTCAAGGAG
Seq A exon
GTGAGTCGGGCGCAGTGCCACTGAGCGTTGGCGGCAGAGCAGGGAGGGGGACGCAGTCACGGGGACTGAGCTGGAGGGGGGGGATCTGTGCTGCGCCCCCTCCTGCAGCAGTGCATCCTCTCGCAG
Seq C2 exon
GAGGCAGACAGGGGCTACAAGCGCCTGGCCCTCGGGCAGCCAGTGGGGCTGCGGCACACCGGCTACGTCATCGCCGTGCAGAACGTCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006853:ENSGALT00000011085:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0395013=tRNA-synt_1c_C=FE(18.1=100)
A:
NA
C2:
PF0395013=tRNA-synt_1c_C=FE(16.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATCGATGTCGTCATGCCCA
R:
TTCTGCACGGCGATGACGTA
Band lengths:
187-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]