MmuINT0130117 @ mm10
Intron Retention
Gene
ENSMUSG00000032604 | Qars
Description
glutaminyl-tRNA synthetase [Source:MGI Symbol;Acc:MGI:1915851]
Coordinates
chr9:108514290-108514635:+
Coord C1 exon
chr9:108514290-108514394
Coord A exon
chr9:108514395-108514542
Coord C2 exon
chr9:108514543-108514635
Length
148 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TCCATGCTTCTTTTCTTTAGGAG
3' ss Score
9.44
Exon sequences
Seq C1 exon
CCCTTGGACATCCGAGTGCCAAATTTCCCAGCTGATGAGACCAAGGGTTTCCACCAGGTTCCTTTTGCTTCCACTGTCTTCATTGAGAGAAGCGACTTTAAGGAG
Seq A exon
GTAAGTGGGGTTTACTGCTAGGTCTATTTTTAATAGCCTCTCCTTCCTGCTTTACATGAGCCAATCCCTAACAAACATGAGGTTGGGAGAAGCCTTGTTCTTGGATGATGTTTGCAGCTTCTGTATCTTCCATGCTTCTTTTCTTTAG
Seq C2 exon
GAGTCAGAACCAGGCTATAAGCGCCTAGCTTCGGGCCAGCCTGTGGGCCTGAGACACACTGGTTATGTCATTGAACTGCAGAATATTGTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032604:ENSMUST00000006838:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=NA C2=0.183
Domain overlap (PFAM):
C1:
PF0395013=tRNA-synt_1c_C=FE(18.1=100)
A:
NA
C2:
PF0395013=tRNA-synt_1c_C=FE(16.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGACATCCGAGTGCCAAA
R:
CCTGACAATATTCTGCAGTTCAA
Band lengths:
196-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types