BtaINT0121058 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011129 | QSOX2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:HGNC:30249]
Coordinates
chr11:103746674-103749397:-
Coord C1 exon
chr11:103749209-103749397
Coord A exon
chr11:103747299-103749208
Coord C2 exon
chr11:103746674-103747298
Length
1910 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CGGCCCTCCTCCTCCTCTAGGGC
3' ss Score
11.31
Exon sequences
Seq C1 exon
GTCTCGAGGACGACCCGCAGGCTGTGCTGCAGACCATCAGGAGGTATGTCCACGTCTTCTTCGGGTGTAAGGAATGCGGCGAGCATTTTGAGGAAATGGCTAAAGAATCAATAGATTCCGTGAAAACCCCGGACCAAGCGATTCTCTGGCTTTGGAAGAAGCATAACCTGGTCAACAGCCGCTTGGCAG
Seq A exon
GTGAGCAGAAGCCACTGGGTGGCCCAGCCTGCGCGGGGCCTGGTGTGGGCGGCGGGGGCTGCCTGCCCGTGGGGCCACGGCCGGGCCGTCTGTGGGATCAGGTGTCAGTCTCCTAGTGACCTTGCCAGCGGCTGGCAGGCCACAGCCGTCCCCAGCTCCCGTCCCCAGCTCCCGTCCCCAGCTCCCGTCCCCAGCTCCCGTCCCCGGCTTCCCAGACGCTCTCGCACTGCAGGGCTCCCAGCTGTGTGGACGTGGACGTGCCCTTGCCTTGGGGAGCCCACTAGGCCCCCAGTAAACGCAGTGGTGGGAGACTGGGAATACAGTTCATTGTCAACAAGGGATTTTAGTGTCATTAAAATCTGCCCTCAGATCTTAGACCAAACTCCTCAGAGTGGTTTTGTTTGAAGAAAAACTGGGGCGCACATATTTTCTCAGAGTTAAGTAACTCAAACTGTTCCTAAATCACTGGCAGATTAAAATTAGGCTTAAATGTAATCCGCCGAGAAATAAGTCTTAATAGAGATGAATAGAAAATGCCACTCAACTGTTGGTTTTTATTTAATCCACTGTATTATAAAAACATATTACAACTAAAGCACTAAAGAAAATTGGTTTTTCTGGACGTGGGGCTGAGGGGCTGCGGGTCCGGTCACGTGGGAGTCGTGCCTCGCCCACGGCTGTAGGTGGAGGCCCGTCCGCCATGGCCCTGGTTCTGACGGCTCCACGTCCAGGGCGTCAGGGCCCTCCTGCCCCGGCTGTCCCCGCCCCCCTCCCTCACAGGGGCCTCGTCGTGACCCCGTCGTGGCAGCGCTCAGCCCTGGCGCAGTCGGCGAGGCCCCAGCCAAGCTGCCCTGAGCAGGCTCAGTGTGCCGTGTGCAGTGCTGTGTGAAGGCGGCCTGAGATGGGGTCGCTCCTGTGACTCTGTGTGTCCCCCAGCCCCTCCGTCCCGCCTCTGGGGTGAGGTCTGTGTGGTTCTGTGGAACACGCTCTAGCAGCCCCTCTCTGTCTTGGGGGGTGTGTTTCCAGACCCCAAAGGGGAGCGCCCGGGCCGTGAGGCCCTCATGGCCCTGTGGCTGCTGCCCAGCGCAGCCTGTCCTGAGCACCCCACTAACGAAGTGGCTCCTTGACGTGTGTGTCCAGAAGGACTGGGTGGCAAGGCGTGCCCGGTCAGGTCAGGGAATCCTGGGAGTCCATGGGGCATACTTGCTGCCCCCTGGGCCTGTGGGAGCCCCGGGGTCCAGGGCCGTCACTGCGTTGCGAGCGAAAGGGAAGCGGGGGCTCATAAGTGCGGCTGTGCGTGCGGGGCCGCCCGGCTCTGCCTCCAGGGCCGCCACTGCACTGCGAGTGAAAGGGAACCGGAGGCTCATAAGCGCAGCTGTGCGTGCGGGGCCGCCCGGCTCTGCCTCCAGGGCCGCCACTGCACTGCGAGTGAAAGGGAACCGGAGGCTCATAAGCGCAGCTGTGCGTGCGGGGCCGCCCGGCTCTGCCTCCAGGTCTCGCCCCCAAACAACGGCTGATGGCCCAGGCCGTGCTCTGCCCGCGTGTGTGCTGAACAAGGGAGCGAGTGAGCCAGAGGGAAGGTGTAGGAGAGGGTCCTCTTGGAGGTCTTTGTACCCATGGGGCACCTTAGGGAAGGGAGGACCGCACCTCGTCACGGGCCAAGGTCAAGGGCGCTGAGCCGGGCACTCGCCCAGCCCCTTCTGGGTGTTTGGGGCAGGGTCTGGCTAGGGGAGTGGCAGTGCCCACATGAGGACACTTCCTGTGCTGCAAGTGCTTCAGGGAAGTGGGCGGCTGTGCAGGGTAGGGTGGGAGGGACAGGGTGGTGGGCGAAGGGGGAGGCGGGCAAGGCCCCCAGGGTGCGGGACAGGCGGCCGGAAGATCTCTTCACCGCGGCCCTCCTCCTCCTCTAG
Seq C2 exon
GGCATCCGAGTGAGGACCCCAAGTTCCCAAAGGTGCCGTGGCCCAGCCCAGACCTCTGCCCAGCCTGCCACGAGGAGATCAAGGGCCTGGGGACCTGGAACGAGGGCCAGGTGCTGCTCTTCCTGAAGCAGCACTACGGCAGGGACAACCTTGTGGACACACACTCCGCGGACCTGGGGGGCCCCGGCGAAGGCGCCCCGGCCCCGGGCGAGAAGCAGGAGGGCAGCCAGGCTCCCCCAGAGCAGCCCCCCGCAGACCACGGTGCCGAGAGCCTGCGTCCGCCCAGCCTGCTGCCCCCCCGGGCTCACCTGTCTGAGAGGTCGCAGCCAGGCCTGGACCTGCTGCTCGGGAGCCGGGCGGGGGGCGAGGGCCGCCGGGGCGCCGAGGCAGCCGCGGCCTTCCTGGGCATGGGCTTCTCCAGCCTGGACATGAGCCTCTGCGTGGTGCTCTACGTGGCCTCGTCCCTCTTCCTCATGGTCATGTACTTCTTCTTCCGCGTGCGCTCCAAGCGGTGGAAAGTCAAGCACCACCATCCTTCCGTGTAGGACGTGGCGAGACTGCGGAGCCGCCTCCAGCGGGGCTGCCGCTTGTGCTCTTCAGATCAGGGACGTTGTCCACACTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011129:ENSBTAT00000042859:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=NA C2=0.425
Domain overlap (PFAM):
C1:
PF047778=Evr1_Alr=FE(61.2=100)
A:
NA
C2:
PF047778=Evr1_Alr=PD(14.6=8.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATAACCTGGTCAACAGCC
R:
GACCTCTCAGACAGGTGAGCC
Band lengths:
352-2262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development