DreINT0017532 @ danRer10
Intron Retention
Gene
ENSDARG00000077174 | QSOX2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:HGNC:30249]
Coordinates
chr5:63626869-63634334:+
Coord C1 exon
chr5:63626869-63627057
Coord A exon
chr5:63627058-63630164
Coord C2 exon
chr5:63630165-63634334
Length
3107 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CTGATTGACTTGTCTTGCAGGTT
3' ss Score
9.44
Exon sequences
Seq C1 exon
GTTTTGAGGACGATCCCTTGGCAGTGCTTCAGACCATGCGTCGCTACATTGGGACCTTCTTTGGATGCCAGGAGTGTGGGAAGCATTTTGAGGAGATGGCACAGGAGTCTCTGAACCAGGTCAAGACTGTTGATGAGGCGGTGTTGTGGCTCTGGAGGAAACACAACCAGGTTAACGCAAGACTGTCAG
Seq A exon
GTGAGAGATTTGAGATTTTAAAATAAAAAGGAAAAATTTAAGTAAAAAATAGTAAAGTAAGAAATGAAGGACATAAAGGATGGCATGGTGGCTCAGTAGTTAGCACTGTCGCCTCACAGCAAGAAGGTCGCTGGTTCGAGTCCCTGCAAGGTCAGTTGGTATTTCTGTGTGGAGTTTGCATGTTCTCCCCATGTCGACATGTGTTCTCTCTGGGTGCTTCGGTTTCCCCCACAGTCCAAAGACTGTGAAATGTGGTACAGGTGAATAGAATAAACTAAATTGGCCGTAGTGTATGAGTGTGTGTGTGTGAATGTGGGAGTGTATGAATGCTTCCAAGTACTGGGTTGTAGCTGGAGGGGCATCTGCTGTGTAAAACATATGGAATAGTTGGCGGTTCATTCCACTGTGAAAATCCCTGATAAATGAGGGACTAAGCCGAAGAAAAATGAATGAATGAATGATGTCATAAATATGAAAAATGCTCTAAAAAGTGTGGGAAGAAAATAATAGACAAGAAAGAAAGGAAAAAAGGGTTAAATGGAGAAAATGTATAAAAGTACAACCAAATAAAGAAAATAATATGAAATATGACAGCATAAATAAAATAAATGTTTGGAAGAAAAGGAAGGAAGGAAGGAAAGAAAGAAAGAAATAACGAAAGAACGAAAGAAAGGAAAAAGTTTTAAATCGAGAAAATTAAGTACAATAAAAAAGAAATAATATGAAATATGACAGCATAAATATGAAAACTGCTCGGAAGAAAATAACCAGAAAGAAAGAAAAAAAGAAAGAGAAAGAAAGGAAGGAAAAGGGGTTAGATAAAGAAAATGAAGTACAACAAAACAAAATAATATGAAATATGACTGCATAAATATGAAAAATGCTCGAAAGAAAGAAAGAAAGAAAGAAAGACAGAAAGAGAAAAAAAGATAGAAATAAAATTAAGTACAGCAAAATAAAGGAAACCACTGAAAAATATGATTGGAAAAGAAAGAAAACTTGAAAGAAAAAAAAGAAAGATAGATATGAAGGATGAAAGTGCAGGAAGGAAGTAATGGAAGGAAAAGGGAGGTAAGAACAGAGACACAACCAAAAAGAAAAGTGAAAGAAAGAAGGTAGGGAAATGAAACAAGAAGCACCATGAAATGACAGAAATAAAAGGCAAAAAGAATTAAATTAGGAGAAGGAACAGGAAAAATATGACGGTAAGAAAAAACTAGGAAAAAGTGCATCAAGGAAGTATGAAGATGGGAAGCAATGGAAAAGCAAATGGAGAAAAAATGTGAAAGAAGAACAAAGTATTAGAAAGAAATAGGAAAATAGTGATTCAAGAAAGAATGTGAAGAACATGAATGAAAAAAGTATAGGAAAGGAAAAGATTGATGCTATAAGGAAAATCTGTAGGAGAAATCAAACGGCTAAGACATTTAGAAAGAATAGAGTATTTAAAGGAAAATGAATGAGTGATTCAAGAAAGCAAAGACGAGAAGACTGTAGGACAGCAAGGAAGTGGAAAACGCTGAAAAAGAAAGGGTAAAAAAGACGGACAAAAGAAATTGAAGAATTATGCTAGGAAGGCAGACAGAATGAAAGTAGAACAAAAAGGAAGGAATATGTCCAAGAAGGAAATATGGGCAGCAAAGGTGAAACAAAAAAAAAAAATAAAAACATTGAAAGAAAAATGAAAAAAGACATGAAGGTGATTCAAGATTTAAAGATAAGAAGTACAACACAAAAGAAGGAAAACTGACAGGAAGGAAGGAGAAAAGGAAAAGAAACTGATGGGAAGTAGAACATAAATAAAAGACTTAAAATAAAGGGAAATGGACAAAAGACGTAAAAGAATAAAGTATTGAAAGAAATTGAAAGCAGTGGTTTAAGAAAGGCAGACAGAATGAAAGTAGGACAGAAAGGAAGGAAATTGACAAGAATGAAACATGGACAGAAAAAGCTAAACAGACAAAATGAATAAATAAAAGTAGTGGAAGAAAAATAAAAGACATGAAGAGGAAAACAGGGATAAAAGGTGAAAAGGAAAGAGTGAAAGAAAGAATGACAGGAGGTTGGACTGAAAGGAAGGAAAATAAAAATGCAGAACGAACCCAAGTACCAGAATTAAGGGAAAATCAAAGACAGGAAAAAATACTTAAGTGGTAAGAAGGTAGGAAAATATAACAAGAAAAATGGAAGATGAAGACTGATGAGCAAAGACAAAATCTGATTCTGAATGGATACTGGCTGTGTCCGAAATTGCCTACTACTCGAGTAGGTACTACATTGAAATTTACTACACGACCATTAGAAAAGTACGTTATATATAGTGTGAATGTGAGTAGTATAAATGGAATTGGGACGTACCAAAGTCCCTTTAAGGCAAGTCATTCAACTCGCCGGCCATTTTTGAAATGCCTCTGGGGCAATTAAATTAGTCAGCAATAGGCCACTGTCTAAGCTGGTGTATTTGCATACAGCGTTCTGATTGGCTGACGCTTCCGTCGGCGCTTGAAAAGTTGAGCTAGTCTCAACAACGAGCAACGCCTCTGAAGCGGCACCGACCATCCACAATAGAGTTCGGCAACGCCTGACATTACCCATTCAAATTGAATGGAAAGCGTTGAAGCTGACTCCTCGTGTGAATGGGGCGTTACTCCTTAATTAACTTCATGGCTCGCTAACTGTTTTTAACTATTTAGTACTGAATATACTATACAGTGGTTCTCATTTATCGTGGGAGTTATGTTCTAAAAACTACTCGCAATAGGCGAAATCCGTGAAGTAATACGCTTTATTTTTTACGATTATTATAGATGTTTTAAGGCTGCAAAATGTCTTCTTTTTACTCCCGAGGCATTGTGAGATAGTGTAATGTCCACTGGATGCGCATTTCAAAATTTCGCTTGAAGTTGTACTTCGGCCAGGTAATTCTCACATACCGTTTTTCGAATACTATGAATTCGGACACACTTCTTGGCTCACTTACGGTTTTTAACTATATTGTACTATATAATAGGGAAGTATACGATTTCAGACACAGCCCTCATTATCAAACTTGCACGTGTTAAGTTATAGTCTGCATCACGCTCATGGCTGATTGACTTGTCTTGCAG
Seq C2 exon
GTTCGATGAGCGAGGACCCGATGTTTCCTAAAACTCAGTGGCCCACCCCTGACCTCTGTCCCACATGCCACGAGGAGCAGGAAGGCCTTCATGTCTGGAACGAACAGATGGTGCTCGCTTTCCTCAAGCAACACTACAGTGCTTCAAACATCTCTCCGAAATACTCCAGCAGCCAATCAGAACCAGGCCCACCGGCGCCCGACAAACCCAAAGCCATAACCAAACCCAACAGCAAAATCCACATCAACCAGAACCTCAAGTCTCCCGAGATCCTTCCCAAGCATCAGAAAAGGACTGACAGTGGTGGTGAGGTAGAGAAGCACAGCGGCGTCCAGATCGAGGCCAGGCCAGGGATGACGTTCTTAGGTTTGGGATTCTCCAGCGTGGACATGAGCCTCTGCGTGCTGCTTTACGCTCTGTCCTGCGTTTTCCTCATGTTCATGTTCTTCTTCTTTCGCTTTCGCTCAAAGAGATGGAAATTCAAAAACTACCGGCCGTATGTATAGCGGAGATGGGGCGCTGTGAGGAGAAAAAAAAAGGTGAATGTAATATGAAAATCCCTGCCAAGTGTTAAAGGAGACTTTTAATTTATTTGATTTACTTTTTATTCGTTCCGTTGTTGATGTTGTGAAGTATTTTGTAATGAAGAACTTGACTGATGAAAGTTTGGTTTAGTTGGTGAACGAGCACCTTTTTGCGAGTATTGCTCTGCTCTAAACCAAATGAGGGGATGATTTAACAGGAGAAACTATTTTATTACGGTGAAATGAACAACTTGGGTCAAAGTCTATTTTTTATGGAATACGCTACATTATTTATAGAGATTTTTATTGAAATAATATATCCTAAGTTTCTCACAGGGTATATTATGAAAGTCACTCTGTCCCCATATTTCTGTTTGATGGTCCAAGAAAACACTTGGGAATTTGATTTACTTTGTCGCTCAAGGTCGCTCGCTGAGAAGCCAGTGACACGAAACACACTGCCTGTCAATGACCAGAGGTGGAAGCAAAAACCCTGTGTTTTGTGAATTTAAAGGCTGCTTTTTCAAAAAAAAAAGAGCCACATATTTATAGACTTCATTAAAATTCTGATTTACTCTGGATTTACATGAGTACAGTTATGGAAACTACTAATGACACTTCTTCTGAATTTAAAACAGAAATGTTGACATTTAGCAGAGGTGGGGGTAAGTCACAAGCAAGTCTCGAGTCAACCTTTAAGCCTCAAGCAAGTCAAGTCAATTTTTGTCAGACTCAAGTAAAGTCACCGCTTATTTCAGGTCAAGTGAAGTCGTAGCTTGGTCTAGCAAGTCACTTTCAAGTCAATCAAATTTTTGTAGATTTTCGAACTTTTGCTATTTTGTATATACAAATAGTATAAACTTTGATTAGCCAAGATGTAAGCTGAAAACAACTGAACTAACTTCATAACTTACTATCTTTGGTGTGATTTAAATTGTCAAATGAACTTAAAAGTTGTGGTAATTGAGTCACTCACTTTTGAGTTGCATGCTTTGCATGTTGCTTTTCTTTTTGGCGTCGTCTTGCTTGTAATCTTTAAACCCGAATTTCATCTTTGGAGGAGCGCCTTCCATTTCTCGTTACTGTATACTCTTCATGACCTGATTGGTTTAGTTCAGCAAATTCAACTTTGTGTTTCCAGTAAATACTAATCCACAAAATACTTAAAGTTACTTACCTTTTAACTTACCTGGCACCCTTTGACATGGACAAAAAACAATATGTATAGTTATCCACTTATTTAAAAAATCATCAACGCGAGTCAGGAATTGGTTGCAGTGCTTTATTCAGAAAAGTACAGAGAACCTATCTTTCAGAGCAATCTGAGAACCGATAAGCTAATAAGACTGCGCTTGCGTTTGTTAGAACTTTCAGACTTTTTTTAAAACAAACAGTTTGTATTTAACTAAAACAAGTTATTTCGAGTCATTCAACTCAAGTCCAAGTCAAGTCTCAAGCCATGACAGTCAAATCCAAGCAAGTCGAGTCTTTTTGGATATTTGCCAAGCAAGTCTCAAGTCCTAAATTTTGCAACTTCAGTCTGACTTGAGTTAAGTCATGTGACTGGAGTCCCCCTCCTCTGACATTTAGAGGATTTTTGTGAGTAATCACACACTGAGGAAGGCATAGTGCCGAAACGTTTGTCTTTAAATCACTCGAAGAATGTAAGAAGGAAAAGTAAAAACGGTACGAAGCAATTACTTGATGAGTGCCAATCATTACCTTTTTGAGTAATCGACCAAAAGGCTAAACGCCGATTTATACTTCTGCATCGCGTATGGTAGCGAAAACTCTGTGATTGGTTGGCTTGGTAGCAGTGATGAGCATGGGTGGTGCTGAGAGCTGTGAGCCCGATGGAGCGAGTGTTTAACTGCTGAATCCTGTGAAGGAGCTTTAGTTGTTTTATGTTTACCTTTTGATTAAAGTTAGCAGGTTCCAGTCTCCGAATGAGCGAGCTTTAACTACTTGTATATTGAGGTAGCATTCAGAAAAAACAAAACACCCTCGAAGTAACTCAACACAGAGGAACGTAACCTATCAGCATGCAGAAGTACAAATGCACGGCTACGCGCAAGGCTTACGATGTAGGGTCATGGCGATCACTTGATGCAGAAGTATAAATCGGCCTTTTGCCTTTTGGTTGATTACTCACAAAAAACAGCCTTGAGACATGTTTATATTCATTTTTAGAGAACACAGTACAAGTAAAATAAATAAATAAATAAATAAATAAAGCAATATTTGCTGGAATGACCATGATTTTCAATAACAAAAAAATATTCTTTAAATGGCAGAATCTCTGTTTGAAATTGAGAAGAAATGTTATTAGACTATTAAAAGAAACACATAGTAACATTTTATTTAAAGCCATACCGAATATATCCAGTAAAACAGAATTTTCAGGTGATCTTCTATCTTATTGACCTCATAAGTAGGCCCACACGGAATCTGCACGGTCAGATTTCTGCAGATTTTCCGCATATTTCTGCAGATTTTTAGGCCATCGTTAATTCTGTTTATCTACTTGAGTAAATATGTGTGTGAATCTTGATTTACTCAGTTTTTAAATAATTACAGTAATATTATTGACTAATATGAAAATGTTCATCTGATTTATGTACAATGCAGTTTGTACAGTAATTTTTTCTGTCTTTCAGTAGATATATGAGAGACTTGCTTTGTTTACCAAATAAAATGAATTTAATTGGATTTGCATTTTAAACATTAAATAAAAGTTAAAAAGATATTATTTTTTATTTAAAATATTTAGATTTTAGTTATGATACTCCCAAAATAATTCCGCAGATTTTTATCAAAATTCTCTGCAGAAATGGCAAAAAACATCCACAGATTCTGTCTGTCCCTACTTATAAGTGACATTATTCCTAGAGTTGATTTAAAAATCTTATTGTAAATTTCCTCACCAGGGGATTTATGATAACTACATTAATGCATTTCAAAAGTCATCAAATTATGTGTCAAATTTGGTGCTAAACTATATTGATCACAATATTTTCAGTTTATTTTTTTGTACAAGTGATTGTAATGATCAATGCGTTTTAATATAAATCTCCAAACACACACCATCTATGTTGAACCTTATAGGCAGCGATTCATTTAATGTACTCCGAGGATTTCCTGATTACAGGCTGTTCAGTGTTCAATGTATATCACTACTGCGGTTTTTAATTCAAAGTTTACAAGCCTGTTGACATTGTGAACTGTTTTAAAATGCCATTATTAAACAAAGTTTGCTTTGTGGACTGATTTGAAGTAACGTGTTCACCTTGTGATATTTCACTATTTAATGGAGCATTGTTGTGGAGGATAAATATTCCCTAATAAAATATGGCTTATGTGTTGTGATGGTAGATGCACATAATGGTGGCCTTTTAAGCTGCTCCAAATGAACGGCTGTAAATTACGTTGCTTGTTCATTATTATTATTATTAATATTATTATTTCCAGTGCTTTAAGAATGATATTTTTATGTAAAGACTATTTTTGGGGGCAGTTGTTCTGTATATATGTAGTTTGTCCTAACAGAGGAGCCGTTGCATTTTGTATAAAGAACGCTGTAAGTTGTCTTTCAAATAAAAATGTATGATTATAATTTTTTTTTATTTCATAAGAGTGTCTATTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077174:ENSDART00000111282:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=NA C2=0.435
Domain overlap (PFAM):
C1:
PF047778=Evr1_Alr=FE(61.2=100)
A:
NA
C2:
PF047778=Evr1_Alr=PD(14.6=8.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]