GgaINT0125843 @ galGal3
Intron Retention
Gene
ENSGALG00000001758 | QSOX2
Description
NA
Coordinates
chr17:8727040-8729457:+
Coord C1 exon
chr17:8727040-8727228
Coord A exon
chr17:8727229-8729284
Coord C2 exon
chr17:8729285-8729457
Length
2056 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TTTTTCCTTCTCTCAATTAGGTG
3' ss Score
10.46
Exon sequences
Seq C1 exon
GCCTTGAAGACAATCCCCGAATAGTACTTGAGGTCATGCGGAGATACATCCATCACTTCTTTGGATGCAAGGCTTGTGCTCAGCACTTTGAGGAGATGGCGAAGGAATCCATGGACTCGGTGCAAACCTTGGACAAGGCTGTTCTCTGGCTCTGGGAGAAACACAACGTAGTCAATAACAGACTTGCAG
Seq A exon
GTATGGAAGGCCTTGCTTAGGAAAACCCACGCAAGGTAGTTGTGTCTGGAAGACAAGGCTATGGTATTTTATACAGTGTAGTTCCTATTGGAACAAATAGGCGTGCAAATAGTACTCTGTAACATGGGTTCAAACCAACAGCAACCATTGTCTCAGCTTAATGTTCCCCTATGAAATACTGACTTAAGACCAGCTCTGTAAGTATGTTGGTGTGTTTGTATGCAGAGCAAGACTTACAGCATCTCAGTCAGCTTTAACTCTGAAGACCAGCCTGGTAACTTTTTCATGACTGAGGAATATATACACTTGAGATACACTCCAGTAGCACAGTTTATCTCTTATGACATACAATGAAAAAGCTTCTCAGAGATGGTACTCCTTCTGAGATGTCACCTGTCACTTGATGAGATGCTGAGTACACAACAAAGCCTTTTCCAAAAGGAGCAATACAGTTCAGCTACTTAGTGGATAAAAATAAATAATTTTCTTTCCATTACAGGTTGAGCAGATGTTAAAACTCATCTTTGTTTTGTTCTGGAAAGATGCTGTAGAGGAGAGGCTGATAATTGGAGAGGAGGCTTTCTCAGGATAAAAGAGCCTAAACTATTATCAGATCAACAACCAAATAAAATAAAATTGCCATATGAAGAATATCTGTTTTCGCCCTCCACCTCAATTGCTATGTTTTCAGTTGGACTAAAAATACAGCTAAAATACTGGGTTCTATTTAATCTGTTCTGTTATGGGGATATCAAATAGCTAAAGCACTAAAGAAAATTGGTTTCTCTTTGCACTTAATCCTCGCCTACTGTTATGGATCTGTGTAATGTAGCATTAGTTACAATTTAAATATGCTGCATTGTGTTTATATCGTGATTGGGCTGAATTCCCAAGATTTATGAAGTATTAAATACTGTTGTGAGTAGAAGCAGTTGGTCTTCTTTCCCCAAGAAGAAAGAAGTATAGGAGGAAGTATTAAAAAAATCATCCCTTAATGTTTGCTACTGTTGCCAGACTGAACACAGGGAGTCACATCTTGCTGACATGGAGTTGCTACGTGGCAGTGATGTGCTTCTTTAAAGCATTCAGTCATTGGAAAACCCACATGGATATTGATTTAAATGATGCAACAGCTGGCTGAAATACCCTTCTAGTAAGAAGTGTAAATGTATTGGAATAAACAGTGTCAAATAATGTATTTTAAGTTTGCTAAAATTTCTCTCTCGGACATCAACTTCCTCTAATCCCTAAAAGCTGCATCTGTATTTCTGGCAATATACATAGCTTTCAGTGAGAAATAATGTTTGAATGGTCAATGAAAGCTCCTTGGCACAGAGTTCAGGTGTGGGTTATGAGATTGCTGTATGTAGCTCTGCACTACTGAATTCCTTCCTGTTGCTTTAAGGTGTACAAAATGTATGCATTCTTTTTGGCAGGGGAACACAAAGTGCAGCAAGTTTTCCATTGGTGATCTTAGCATGAGTTGGTTTTTTCTGTTTTCTCTTCCAAAACAAAGTGATTACGGAGTGATTTTTATTGTAAGACATCTGAAAGGCAGACTTATGCTCTCCCATTTGAATAGCAGAGACAAATATTTGTACCAGCTTACTGCAAGCCAGGCTGGAAGATTAAAGAGCATCCAGTGCAAAAGAGCATTTGTTTGAAACCATAACTCAAATTAACCCTGAAAGGCCCAGCTGGTGGTGTTCTCATGCCTTCCAACACCACGGCACTTGTGGGATCCTGTTGTATTGGAATTCCAATGCTGCATCTCTCAGTGAGAGAAGAGGAAAATAACTGATAGCGTTTGTACTTTGAAGGAGGAAGCAGTGCTTTGGAACAGTGGATGCACCCATCAGGAAAGTCATGAATTGCTTAATTAGGTCGTGACTGCCTTCAGTTTAAAACAAACATTACTGTGCTGTGGTGGGTTTTTTGGTGTTTGTTTGCCAGCCTCACTATTGAGTGAAACACTGCAGTTTCTGCTGAGCTGTCTGACAGTTCAGCTTGCCTCACTCATTCATTTCTAATGTGTTTTTTTCCTTCTCTCAATTAG
Seq C2 exon
GTGATTTGACGGAAGACCCAAAATTTCCCAAAGTTCAGTGGCCAACTCCAGACCTCTGTCCTGCATGTCATGAGGAAATTAAAGGGTTACACAGCTGGAACGAGGCGCAAGTTCTGCAGTTCATGAAGCATCACTACAACAGTGAAAATATTCTTTATAGATACACTGAGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001758:ENSGALT00000034856:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF047778=Evr1_Alr=FE(61.2=100)
A:
NA
C2:
PF047778=Evr1_Alr=PD(14.6=28.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]