RnoINT0121284 @ rn6
Intron Retention
Gene
ENSRNOG00000018574 | Qsox2
Description
quiescin sulfhydryl oxidase 2 [Source:RGD Symbol;Acc:1584720]
Coordinates
chr3:3662324-3667765:-
Coord C1 exon
chr3:3667577-3667765
Coord A exon
chr3:3665375-3667576
Coord C2 exon
chr3:3662324-3665374
Length
2202 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TTTCCTTGCCTCCCTTCTAGGCC
3' ss Score
12.01
Exon sequences
Seq C1 exon
GCTTTGAAGGTGACCCCCAGGCTGTGCTGCAGACCATGAGGAGATACATTCGCACATTCTTTGGGTGCAAAGAATGTGGTGAACATTTTGAGGAAATGGCTAAGGAGTCCATGGACTCCGTGAAAACTGCAGACCAAGCTGTTCTCTGGCTTTGGAGGAAGCACAACATGGTGAACAGCCGCCTGGCAG
Seq A exon
GTGAGAGGCCTGAGTGTTCCTTGCTGTTCCCACACTTGAGCTCATAACCTTGAACCTGGGTTTGGACGGTCTAACCCACTTCAAGGCCCTCGAGGGAGCCCTGGACGGTGTGTTTGAGGACAATAAGTTCCCTCTTGCTAGTGTTTGCTCAGGGTGTCTCAGACCACTTGGAGCCCCTGGCCCTTGTGGCCCTGATGGTGCTCTTTCTTCATCCATATCCCCTTCCCTACCCCCATCCGTACCCCCACCCCCCTACCACTTTACCACAAATAATTCTGAACTCTGGGGGGAAAAGACCCTATAGAAATTTTGCTAAATACTTTTATCGTCTTTAAAATCTGTTGCAGGGACTGGAGATCTAGTTCAATTTGTAAAATTCTTGCCATTCAAGCATGAGGATCTGAGTTGATCTATTAAAAAAGGCAATCTGGGTGCAGCAACACCTATAATTCTGGTGCTGGGGAGATGGAAAGGATCCCTGGCCAGTCTAGCCCAATCCAATCCGCAAACTCCAGGTTCAGTGAAAGACCCTGTTTCAGAACGTAAGAGCAGTCAGAGAGTAACTGCGGAAGATGTTCAGTGCCCTGGCCCCTTCCAGAGTGTGTGTGCAGACACGTGCACACACACATCTCGGATCACTGAATAAACCTCACACGTGACTTTGTTTTAAGAAAACAAAATAGAGGGCCCATGTTGTCTGTCAGGGTTAAGTAATTCCCACTATTCCAAAATCAATGGCAGATTAAAATTAGGCTTAAGAGTAATTCTACTGAGAAATGAATTTAATAGAGATGAACAGAAAATGTCACTAAACTCTAGGTTTTTGTTTAATCTGCTGTATTATAAAGCATATTACAACTAAAGCACTAAGGAAAATTGGTTTTTCTTGGCACCAAGAGCAGACGGTGCCTTTCGTGTGGAGGATTTGCTTTGTCTCAAGGCGCTGCTGTAGCGACCCTTATACAGGGATTTCTCTCTAATGCCTTCCCTATCTCCCTCCCACCAGGCGCCTGGCTCTGAGGCAGCCAGAACAAGACACCAGCTGGGCCTTGCCCAGTCCAGGGCCCCCAGCGGGAAGGGGCGATAGAGCCTGGTGCAGTGTTGCTCCTAAGATTCCTTGCCTGCTCAGCAGCCACATCACCAGCCTGAGTTTCGGGTCTTCATCTCTTTGTCAGATCCGTGCTTTGTTTTAGCAAGACCCCTGCTGTGTGTCTCAGAGAGTTCATCCTCATCTCCTACTAGCTGACTGTCCAGGGAGTGCTGACTGGCCTGGGCCTTGTCTCCTCACCCTGTGTGTACACACAAAAGATGGTCCTGCCGTTATGTAATTCTGTACACACTTGGAACAGTGGGACACAGGGTAATCACAGCAGAGCAGTGTGCACTTCCAACTCTGGGGAGGGATCAGGGCAACAGTAGGGATGTGGGAGGCCCCAGGCCAAACACTTTGGGAGAGTCGTGATTCTGACTGGGAAGCTGAATCCCAGCTGGGAAACACAGGACAGCAGTGCTGGGTGGCTTCTTGTGTGTGCTTGTCTAGACAGGTGTGGACATGACCTGGGAGGTAGCAAGACTTAAGGGAGGCCCGTTTCCATCAGGAGCCAGGTTCATATGTACTGCAGGTGTCCTGGTTTGTCTAAACATGACTTCCCTACTGGAGTCAAGTCCAAAGTCTTTAGGAATCTTCAGGGCCTAGGGTCATGGGAAGGGGTCTAGAGCGTGGAGAAATGTTTGAGTAAGTAGTGTCCTGGGGAAGGGGTGCTTTCAGCAGCCAGAGTGCTCAAGGACTGCGAGGTGGTGGGTCTCAAGGGCACTTTAAGAAAGACACATGGTGGTGTAAGCCACAGGCCGATCTCTATAATTTCAAGGCCAGCCAGGTCTATAGAATAAGTTCCAGGACAGTCAGAGCTACACAGAGAAACCCTGTCTCAAACAAAATAGGACATAGGAATGAGAACTTGATGGGCCCAGGTAGGAGGGAAGGTCTAGGTAAGTCACAGAAGAGTGTAGTCCTGAGAGGCAAGTAGAGCCCAGAATGCAGTGCACTTCCTTTAAATGCATGGCTTGCCAGAAAGAAGAGGGCATTTGGATGCCCAGGAGTTGGGGAGGGAAGGAAGCTGGGACATGAGTGCTGGTGGGTGAGAGTTTTATCACCCTGTGGCTGAAAGGTTTCTCTGGGGTTTTTCCTTGCCTCCCTTCTAG
Seq C2 exon
GCCATTTGAGTGAGGATCCTAAGTTTCCAAAGGTCCCATGGCCCACTCCAGACCTCTGCCCAGTCTGCCATGAGGAAATTAAAGGACTAGACAGCTGGGATGAGGAGCAGGTGCTTGTGTTCCTGAAGCAGCACTACAGCAGGGACAACCTGGTGGACACATACTCTGTGGACCAGGGCAGTCCTGGTGAGTGGGAAGGCATGGGCAGACGGCAAGAAGAAGGCAAAGGTCTTAACCCCTCAGGGAAGGCCTGGGGACACCAGGACACTGAGAGTCTCCGTCCAGCCCATATTCTGGGGCCCAGAACTGACCTTTCCAAGAGCCTGCACCACAGGCTGGACCTAAGACTACAGAGCCCTCAGGGACCCCAGACCCTTGAGGAGGCCAAGGCAGTCGTGCCCTTCCTTGGGGTTGGCTTCTCCAGTCTGGACATGAGCCTCTGTGTGGTGCTCTACGTGGCCTCCTCCTTGTTCCTGATGATCATGTACTTCTTCTTCAGAGTAAGGTCCAAGCGATGGAAAGTTCGGCTCTACCACCCAGCTGTGTAGAGTGCCTGGGTCGGTCATTCCTGGTGACACAGAGGAAGCCTTTGAAATCACCCACCCACCTGCAGCTTTAATGTTGGGGTCAGGGATTTTACAAATGTGCCCAGCATGGTGTCGGGAGGAGCATGTTTTGTTCTGTTTTTTTCTAATGGAACATTTTTGCCTTGTCCTCACCTTCCTGGCCTCCATGTTAGACTCGTGTGATTTGCCCCTGTAGGCTAGAAGGAGTCAGGTCCAACACAAAGCCACACACCCTTCCGTATTGCTGCTCCTTCCAGGAGGCCTCACATCTACGTTTGTTCCCTCCCCAAACCCCATCTCATGGGGGCAGTGTCCAGAGATGCGCAGCCAAAGCACAGAGGCCTCCAGAGCTCACTGCTACAGATGCAGGCTGTGTAGCAGTTCCTGCACAAGCCTGATGTGTTTTCATAGGAGTGCAGGTGCTCTGGTCACCTTGTGGGGTGCAGGGCCTAGAGGCCACTAGGTTATGTTATGGCTTCCCTGTGTCTTAAATAACCAGATCAGGTGGGCGATCCTGGTCCCTGTGGGGCAGTGCAGTCTCCAGGAAGCCTCTAGAGCCCCTGTCATGTCTTTCATACACACTGCAGAAGACACTGGTGGTAGCGTGGGGTGCTACCCCTGCATACTAGGCCTCCTGGCCTTGAGGGTAACTTAAGAACAGCAACATCAGTTTAACAGATTAAATACATTATTTGTAAAATCCCAATGGTAAACTTGTGCCTAAAGACTTTTTAAAAAAATGGACTAAGCCTACATTCCTACCGAGGCTCCTCACGGCTCAGGAGCCTCTCTTTATTTGGACAAAGCAAGCTAGTTGTGTGTCTGTCTGTCTCTGTGTGTCTGTTTGTCTGTCTGTCTGTCTCTGTACATGTATGTGTCTGTCTGACTGTCTCTGTGTGTGTCTGTCTCTGTGTGTGTGTGTCTGTCTCTGCGCATGTATGTGTGTGTCTGTCTCTGTGTGTGTCTGTCTGTCTCTGCACACGTGCGTGTGTGTGTGTCTGCCTGTCTCTGTCTATGTGTGTGTCTGTCTGTCTGTCTCTGCGTGTGTGTGCGCGCGCACGCATTTATGTGTGTGTGTGTGTCTGTCTCTGCGCATGTATGTGTGTGCCTGTCTATTTCTGAGTGTGCATGTGTGTGTGTCTGCGTGTACACCTCTGTACTCACATGGGGATGACTAGGTTACATATACATTCCACTTTGCATATTCTATATTTTATATTTGCATCCTTCCCAGTGACAGTTGGTCACATGGGTACCATTTAAGACCCTGTATTATCAATGTCCCTGCTGCCACTTAAGAAAATGGACAGCTGTCTCCTTGGGCTGTTGTTAACCCTCCTTTCATCACATGGGAGGATCAGTGCTGAGAGCCAGGCCTCCCTGGCTGGGGCAGATGGCCAGACTCAGCCACTTGAACCTCCTGCTTCACTTCCCTGTGGCAGGAAGTGTCTTCTTTGAAACCTGGAGTCCTGTGCTTAAAAACAAACAAAAAATAGTTCATCCTGGGGCTGGGGATTTAGCTCAGTGGTAGAGTGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAGAACCAAAAAAAAAAAAAAAAAAAAGTTCATCCTTAGGTATTTCTAAGGATAGACACCACTGGTCTGTCAGGTAGAGAATTGGGCCTATTTAAGGACAGGTCCAGTGAAATCCTTCAGCCCACAGTGGAACCACTGGGGAGCATTGTTGAAGGGGGCCTCAGCTGTGGCCCTGGGGTGCCATAGCACCTCACAATGTTTGCAGAAGCTCACTCTGGGCAGATCCTACTTCAGCTGCCCTTGTAGAGTCCCAGGTCATCCCTTCTGGGGGACAAGCTTGCCACGGACATCCCTTTTTGAACTGCTCATTCTGCAGTGAAAAGGCTTGCCTTCTCCAGGGCCCTGTTCAATACAGGGACCCACCTTTGGCCAAGTATAAGGTCTGTTCTAAAGTCTGAAGTTTTATGAGAGGTATTACGATTAATGTCTAGAATAGTTCAGTAATTTAAATGTTTATTTATTTTTGATGCAAATATTTTGAATAAAAAGCCAATTGGCATGAAAATGTCAATGAAATTTCTTAACTTAAAGAAGGGGTACATTTTGTATTTAAACTCTAATGTGTACATTGTAAGAATAAAGAAATTTGACATTAATAAAGTTGTTACAGTTTTTTGACATGTGAGCAGCCGTGTGTAAAGTTAGACTCGGGATTCTCTAAACCGTTCTCTTCCTTCTAGTTTGCAGCCCCAACTCGGGAGTTCTAGGAATTTTTGCATAGATAAAGTAGAGGCTTTTGGAAGGACAGCCTAGAGGCCAGGCAGGAAGTGAGGAATGAGAATCAACTGTGCTGAGAGCTGCAGGACTCCGAGCCTTTGTCAACACAGGAGAGGAAACAGTGCAAGTGCCTCCTCACACTGTTTCCAAGCCCACAGACAGGACTCTAGACCCCGAGCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018574:ENSRNOT00000061735:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=NA C2=0.198
Domain overlap (PFAM):
C1:
PF047778=Evr1_Alr=FE(61.2=100)
A:
NA
C2:
PF047778=Evr1_Alr=PD(14.6=8.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]