MmuINT0130221 @ mm10
Intron Retention
Gene
ENSMUSG00000036327 | Qsox2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:MGI Symbol;Acc:MGI:2387194]
Coordinates
chr2:26211274-26214169:-
Coord C1 exon
chr2:26213981-26214169
Coord A exon
chr2:26211460-26213980
Coord C2 exon
chr2:26211274-26211459
Length
2521 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TCTCTTTGCCTCCCTTCTAGGCC
3' ss Score
11.19
Exon sequences
Seq C1 exon
GCTTTGAAGGCCACCCCCAGGCTGTGTTGCAGGCCATCAGGAGATACATTCGCACATTCTTTGGGTGCAAAGAATGTGGTGAACATTTTGAGGAAATGGCTAAGGAGTCCATGGATTCTGTGAAAACTCCAGACCAAGCTGTTCTCTGGCTTTGGAGAAAGCACAACATGGTAAACAGCCGCCTGGCAG
Seq A exon
GTAAGAGGCCTGCATGTTCTTTGCTATTCCCACACTTGAGCACATAGCCTTGAGCCTGGATCTGGAGGGTCTGACCCACTGCAAGGCCCCCAAGGGTGCCCTAGACAGTGTGTTTGAGGACAGTAAGTTCCCTCTTGCTACTGCTTGCCCAGGGTGTCTCAGAGCACTGTGTCCTGTTGGCTTTGGAGCCCCTGGCCCTTGTAGACACAGATGGGGCTCTTTCTTTACCCGAATCTCCCTCCAATGCCACCCCTACAGCTTTACCACAAGTAATTATGAACTCTGGAAGGGGGGGGGGAACCTATAGCAATTTTGCTAAACACTTTTATTATCTTTAAAATCTGTTCTCAGGGACTGGAGATTTAGTTCAATTTGTAAAGTTCTTGCCATGCAGACAAGGATCTGAGGATCTGAGTTTATCTATTAAAAACATAACCTGGGTGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACCGACTGCTCTTCTGAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTAGCTCACAACCATCTGTAATGGGATCTGATACCCTCTTCTGGTGCATCTGAAGACAGCTACAGTGTACTTAGATATAATAATAAATAAATCTTAAAAACAAAACAAACCATAATCTGGGTACAATAACCCAGACCTACATTCTGGTGCTGGGGAGGATCCCTGGATCTTGCTGGCCAATCCAGCACAATCCATTCTGCAAACTCCAGGTTGAAGGACAGAGCCTGTTTCAGACCATGAGAGCATCAGAGAGTAACTGAGGAAGATGCTCTGTGCCCTGACCCTTTCCAGAGTGTGCACACATAGCACAGGCACCCAGACATGTACACACACACACACACATCTCAGATTGCTAAGCAAGCCTCACATGTGATTTTGTTTTAAGAAAACAAAATAGAGGGTCCATGTAGTCTGTCAGGGTTAAGTAATTCCCACTATTCCAAAATCAATGGCAGATTAAAATTAGGCTTAAGAGTAATTCTACTGAGAAATGAATTTAATAGAGATGAATGGAAAATGTCACTAAACTCTTGGTTTTTGTTTAATCTGCTGTATTATAAAGCATATTACAACTAAAGCACTAAAGAAAATTGGTTTTTCTTGGCACCAAGAGCAGACGGTGCCTTTCGTGTGGAGGATTTACTTTGCCTCAAGGCGCTGGTGTAGTGGCCCTTAGATAGGGATTTCTCTCTAATGCCTTCCCTAGCTCCCTCCCACCAGGCGCCTGGCTCTGAGGCAGCCAGAACAAGACACCAGCTGGACCTTGCCCAGTCCAGGGGCCCTGTTGTCCCCCACCACAAGTGCCCACATCATTAGGCCACAGCGGGAAGGGCTGTGTAGCCTGGTGTAATGTTGCTCCTGAGACTCCTCACCTCCTCACCAGGCCCACCAACCAGCCTAGGGGTTGGCTCGCTATCTTTGTCAGACCGTGCTTTGTTTTATGTAGAAGACTCCTGATATGTGTCTCAGAGAGTCCATCCGCATGTACTGGCTGACTCCTTCAGCCAGGGCTGGCTGGCCTTTGCCTTGTCTCCTCACCCTGTGTGTAGTGTAGCACCTATCACACACACACACACACACACACACACACAAATAGACCTGCCTTTATTAACTCTGTACACGCCACACTGTGGAGCAGAGGGGCACAGGGTAATCACAGCAGAGCAGTGTGCACTTCCATCTCTGGGGAGGGATCAAGGGAGCAGTAGGGACACCTTGGGAGAATCATGTTTCCGAATGGAAGCGTGTTTCAGCTGGGAAACACGCAGGAGCAGTGCCTGGTGGCTTCTGGTGTGTGCTTGCCAATACAGATGTGGGGATGACCTGGGAGGTGGCAAGACTCAAGGGGGACCTGTTTCCACTTAGGAGACAGGTTCATATGTATGTACTGCAAAATGTCCTGGTTTGTCTAAACATGAATTCCCCTACTGGAGTCAAGTCCAAGGTCTTTAGGAATCTTCAGGGCCTGGGGGTCAGGGAAAGGTTCTAGAGTGTGGAAAATATGTGAGTAGGTAGTGTTTGGGGCAGAGGAAGGGGGGATGCTTCCACCAGCCAGAGGGCTCAAGGGCTTTGTGAGGTTATGGGTCTCAAGGGCACTTTAAGACAGACACAAGCCAGCCATGGTGGTATAAGCCACAGGCAGATCTCTCTAATTTCAAGTCCAGCCTGGTCTATAGAACAAGTTCCAGGACAACCAGAGCTACACAGAGAAACCCTGTCTCAAACAAAATAGGACACAGAAGTGAGAACTTGATGGACCCATGCAGGAGGGAAGGTCTAGGTGAGTCATAGAGTCTAGTCCCTTGAGAGGCAAGTAGAGCCCAGAATGCAATGTACCTCCTTTGTATGCATGGCTTGCCAGAAAGAAGAGGGCATTTGGATGCCCAGGAGTGGTGGAGGGAGGAAAGCTGGGACAGTTAGTGTGCTAGGTAGGATGAGACATACTAGCATCCTGTGGCTGAAAGGTTTCTCTGTGGTTCTCTCTTTGCCTCCCTTCTAG
Seq C2 exon
GCCATTTGAGTGAGGACCCCAAGTTTCCAAAGGTTCCATGGCCCACTCCAGACCTCTGCCCAGCCTGCCATGAGGAAATTAAAGGCCTGGACAGCTGGAATGAGGGCCAGGTGCTTCTGTTCCTGAAACAGCACTATAGCAGGGACAACCTGGTGGACGCATACTCTGTGGACCAGGGCAGTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036327:ENSMUST00000036187:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.108
Domain overlap (PFAM):
C1:
PF047778=Evr1_Alr=FE(61.2=100)
A:
NA
C2:
PF047778=Evr1_Alr=PD(14.6=23.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types