HsaINT0135818 @ hg38
Intron Retention
Gene
ENSG00000165661 | QSOX2
Description
quiescin sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:HGNC:30249]
Coordinates
chr9:136206333-136211452:-
Coord C1 exon
chr9:136211264-136211452
Coord A exon
chr9:136209276-136211263
Coord C2 exon
chr9:136206333-136209275
Length
1988 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CCGCTTCCTTTTCTTCCTAGGCC
3' ss Score
10.68
Exon sequences
Seq C1 exon
GCTTTGAAGACGACCCCCAGGCTGTGCTGCAGACAATGAGGAGGTACGTTCACACCTTCTTTGGGTGTAAGGAATGTGGTGAGCACTTTGAGGAAATGGCTAAAGAATCCATGGACTCGGTGAAAACCCCAGACCAAGCCATCCTCTGGCTGTGGAAGAAGCATAATATGGTGAACGGCCGCCTGGCAG
Seq A exon
GTGAGAAGCCCCTGGGCATGGGGGGCTCAGCACGGGCGGAGGGAGGCCCTGGTCCTGGGACAGCAAGGACGGCACGGCTGCCGTGGGGCTTGTCCCTGAGCTTTGCGGCCTCGTGCCACCCACTGTGCTGACGGGATCAGGACTTGGGTGGCTGAGAGCTGCCAGAGCTGCAGCCTTTCCCAGGCTGCTTCTGTCCCCGGCTTTCTAGATGCTTCTCTCACTCCGGGGGCTCTTCGACCCCGTGGAAATGGGTGTGGCTCTTTCTTCCCCCATCGGTACCCACTGGTAGCCCGTTAGACTCTGAAGATGTTTTTGACTCTGGAAAGCTTGGAACGTAATTAATTTTTGATGAGGAATTTTAGTAGTATGGAAATCTGTTGTCCAAACGTAAACCAAACCTCTCAAAGTGCTTTGTTTTGTTAAAAAAAAATAATTAAATAGGGCACATGTATTTTCTCAGAGTTAAGTACTTCAAACTGTTCCTAAATCAGTGGCAGATTAAAATTAGGCTTAAAAATAATTCCACTGAGAAATCTTAATAGAGATGAATAGAAAATGCCACTAAACTATTGGTTTTTATTTAATCCACTGTGTTAGAAAAACATATTACAGCTGAAGCACTAAAGAAATTGGTTTTTCTTTGCCCTGAGCCTGACTGCCGGGGCCGGGGTCATGTGACGAAGGCGCTGTGTGTCTGCGGGGTTTGTTCCCTCGGTCAGCGCAGCTTCTCCGTCTCTCCGCCCTGGCAGCCTCTGCATCGCCGCCGCCCACAGAGCTCCCTGTGCTTTCCCCGAGCCCTCGGCTCTGAGGCAGTGGGACCAGGACCCTCGCCAGGCCTGCCTGGACCTGGAGCCCCTGCTGCTACCTGTGGCCCCAGCCCGCATGTGCCCCCACTACCCCAGTCATGAGACTGCAACAGAAAGGGGCCTTACAGCCCAGTGTGATTGTCACTCCTGAGATTCCCACTCCAGTCCCACCTCCAGCCTGTGCATTGAGACCCAAGCTCCTGGGAGGCCCCTCGGAGATGTGCCTGGGGTCTTCTGCCCAGGGCTGGCGCCTTATTTGACAGTCCTACATGAAGCTCTGGCAGCTTCTGACCAAGGTGCCACTGGTCTGTGCTTGTCCCCTCTGGCTTCGTGTGCAGCACCTGCTGCCGGTTGGCCGGATAAGCACGCAGTCAGTGACTGGCCCGAGTAGGGCATCTCTTGATTTCAGGCACGTCTCAAGTCCCCCAGACAAACGTGGTTGTGTTTACATTCACTTCTGGAAGCTCTGTGAGGGTGGCCAGGTGTCAGCAAGTCGGGTCGCAGGGGCTCCGAGAGCTAGGAGGCGCCGTGCGCCGCAGCTTCTGCATGACGGATGCCTGTTGGGCCTGGAAGTGAGCACATGTCACTTCAGAAACGAGTTTTGGAGATCTTGAAGGGATTTGTAGTCCGGAAAGGGCCAGTGTACCTGAAGTGCAGTGGAAATTCATTGCTGCCCCTCTGCCCTTTCCTGAAGGTGCACCTAAGGCCCACTGTCCATAGCACCCAGGTGGCCGGGGCTCTGTAGGTAGTGGGCCTCAGGTGCACCCTCAGGAAAGGGCAGAGGGGCAGCAGTGGGGGGAGGGGCACACAGGCAGCACTGTGCGGAGAAAGGCCTCCAGGTGAGAGCTGCATGCTCCGTTTTGGAAGTGGAGTGCTGGGTGGTTTGGGACAGGTGTGGTCTGGGAAGTGGCGGAGGCCGAGCGTGTAGCGTCTCCTCACTTGCAGGCTATGGGAACCGGCAGAGGGGAACACGTGCGCAGGGGCCTGCAGAAGCAGGATGTTATCTGGGCCGAACTGCAAGGGACGGGTGGTGGGAAGGGCAGGGAGGGAGGCCTGGCAGGACCCTGGGCCAGGGCAGTGGAGGCCCGTGGTGGGTGGGAGTGGGAGTCCGGTTGCCGCACGCTGCACGTGGCTGCACAAAGCCTCCTTCCCTCTGGCTCTCCCGCTTCCTTTTCTTCCTAG
Seq C2 exon
GCCATCTGAGTGAGGATCCCCGGTTTCCAAAGCTTCAGTGGCCCACTCCGGACCTCTGCCCAGCCTGCCATGAGGAAATTAAGGGCCTGGCCAGCTGGGATGAAGGCCACGTGCTCACATTCTTGAAGCAGCACTATGGCCGCGACAACCTCTTAGACACGTATTCCGCAGACCAGGGGGATTCCAGTGAAGGAGGAACCCTGGCCAGGGGTGAGGAAGAGGAGAAAAGACTCACTCCCCCAGAGGTGTCCCATGGAGACCGAGACACCCAGAGCGTCCGTCCACCTGGTGCACTGGGCCCCAGGCCTGCCCTTCCAGAGAGCTTGCATCACAGCTTGGACGGGAAACTCCAGAGTCTGGATGGGCCCGGGGCCCACAAGGAGGTGGGCGGGGCCGCACCCTTCCTCGGGGTTGACTTCTCCAGCCTGGACATGAGTCTCTGTGTCGTGCTGTACGTGGCTTCATCCCTGTTCCTCATGGTGATGTACTTCTTCTTCCGGGTGAGGTCCAGGCGGTGGAAGGTCAAGCACCACCACCCGGCCGTGTGAGTGCCCGGGTGCTGCCAGCCACGGCGGAAGCTCCCTTGGAGGCAGCCCTGCCCCGTGCCACCTGCAGCTTTAATATTTATGATCAGGGATTTTATAAACATGCGGGCCTGGTTTCACATCGGATGGCACCTTTTGGCTTCAAAGTCCTGGTTTTACAAACGCTCTTCTAACAAGGGAAGAACACGGGGTAATTTTGTGGGGATATTTGCATTCCTGGCGTACTCAAGTCTGTTCATGCTCCTTTTGCAGGTCTTACAGCAAAAAGACTTCTGTATTTTTACTCTTCTAGATGTGAAAAGAGGGTGCAGAGTCCAGGCCAGATAGTCTTCCCCACACACTTTCATCTCGTTTCCTCCACTCCGCCCCATCCTGCAGGGCCTTGTTTTTGTATTTGGAGAACCTCGCCCATCCCCCCCGCGGCTCCTGGCTCCCCCCCACTCCCCTCGCTCCCCCTCCCCCCGCTCCCCCCACGCCCCCTGCTCCAGGCTGCCAAGTGTTTTCCTTTAGCCGGGCGGGGACAGACAGAGCCGGAAGCGCAGTCGGCCTCTGCAGCCCCTCCAAGCAAGTGCTCCAGGGACTATCCTGTGTTTGTAGCTGCTTCCCTAGGGCAGGTTCCTGAGGGCTCTCCTTGTTCCTCCGGGTGTTCGACACCAGACGTGGGGATTTCAACAGGGGAGGAGCCAAGGAATTCTGTGGCTGTGCTGCGTTTCAGAAAATAACCCCCAGAGGCCTTGGGCTGTGGACCTGGGGGTTGGAAGGATGGGGGCTCATTTAACCCTCAGAGGCAGCGCCTTTGTCTGTCTATCTGGTGACAAGAGAGAGACAAGTAAATGGGGGCCGTTGGGACGGCGGGTGCCTGGAGGGCAGCTCTGGGCTCAGCGGGCAGTGCTTAGAGCACAGGCCCCTCTGTTGGGGGATGGGGAGGAGAGCAGTCTGCCCTTGGGAGCGTAGGCCCCAGGGAGACTTCTAAAGCCCCCCCTGTCGTCTGCTCTTCACCCAGCACCACAGAGGCACCTGCTGCACACACAAGCATCTCACTCGGCCCACGGAGGGGGCCAGGCTTCCTTTGCCTGAAGCTGTTTTGGGAAGGGTCTCCACACAGGCACTGATCTCCCAAGCTTTTGTCATGATGTCTTTTACCATTTGATAATTTTAAACATTGTTTTTAAACCCAAAACATTTAGTGGTCCGTTGCCTCTGAAGATGTAAACAAACAAATACACTATTTCTGGGAACATTTATATTGAGATTCTTTGTGGCTATTGGTGTGTCTCACAGGCAAAATTTGATTTGGCTAAAATAGGCTCAGATGTATTTGTGTGCCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGAGAGAGAGAGAGACTTTGACGGTTGTAGATATTTTTTCCGCTTTGCCTACTTTATGTTGTATAATCATGTGTTTACTAACAAGTTGATGACATGGATGTATTCATAAGACCATGTAATATTGATGTGATTGTTGTCGCTTGAGAAAAAAAGGCAACAGCTGATTCTTTCAACAACTGTCACAGAATGGCTGGGCTGAGAACGCTGCCCAGGGCCCTGCAGCTGGCGGGAGAGGTGTCTGGTGGGAGCGGTGTCTGGTGCGTCAGCCTGCTGCTTCGTGTCTCACTCGAGAGTTGCTTCTGGTTTCACACTTTTTAACCCCTCTGTGCTTTAGCAGCCGTGACCTTGCCTTCATTGCTTCATCCAGTGCAGGCCTGGGTTATTGAAGACACCAAAGTGTTTCTCTTCCAGTTTGAAAACCAGGCAGGTTTACACGTGGGTTTCAGTGTATTTGCCTTTGAACCCTTCAAACTAAACTTTAGCCTTTTGGCTGGTGTTGAATGTCTTTAGCTGGGGTGACCTGGAGTGACCTGGGACGGTGTTGTGGTTTACCGTCTCCAGCTTCAGCCTTTCCAGAAACCCTTGTGGAGGGCAGTGTTGGCTGCAGGTTTCATCATATTGCAGTTTGAGGTCACCACTATTTGGGGAACAAGCTTGCGTCCTGCTGAGGGGCAGGATTTTCAGCAGAGCGTCGGTGGGGCTGGGCCGTCGTGGAGGTGGCCCCAGGAGTCATATGGCCATACTCAGACACACCTTGTGTGGCCTGCTCAGAGCTGGATGCCACCTTTAGGCAATGTTTAGAGTCTATTTTCTAAAGTTTTAAGTATTTTAAGAGGTATTGAGACTAATGAATATAATAGTTCAGTAATTTAAATGCTTATTTATTTTCAGTGGAAGGATTTTTATTAAAAAGAAGCTAATTGACATGGAAATGTCAGTGAAATTTCTTACCTGCAAGGAAAGTGAACATTTTGTATTTAAGTAAACTATAATGTGCACATTTTAATAAAGAAATCTGACATTTGAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165661:ENST00000358701:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.078 A=NA C2=0.418
Domain overlap (PFAM):
C1:
PF047778=Evr1_Alr=FE(61.2=100)
A:
NA
C2:
PF047778=Evr1_Alr=PD(14.6=8.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGCAGACAATGAGGAGG
R:
CTGGTCTGCGGAATACGTGTC
Band lengths:
342-2330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development