BtaINT0121063 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011129 | QSOX2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:HGNC:30249]
Coordinates
chr11:103756262-103757725:-
Coord C1 exon
chr11:103757580-103757725
Coord A exon
chr11:103756397-103757579
Coord C2 exon
chr11:103756262-103756396
Length
1183 bp
Sequences
Splice sites
5' ss Seq
CGTGTAAGT
5' ss Score
8.58
3' ss Seq
GCCTGCCCCCCCTCTTGCAGTGG
3' ss Score
9.75
Exon sequences
Seq C1 exon
GTGATCTTGGACCTGATTCCATACGAGAGCATCGAGGTGAGGCGGGCGCTGGGTTCCGACACAGCCTTCCTGCAGAAGCTCGGCGTGCCCTCCCTTCCCTCCTGCTACCTGATCTACCCGAACGGGTCGCACGGACCAGTCACCGT
Seq A exon
GTAAGTAGCATCTGCTGCCCTCCCGCACTGCGTGGGCACTCACTGGTCTGGGGGGACTCACCACCTGGTCTCCAGAATAGAAAGCGAGGGGACCGGCTCTGGCCCCACACGTGGCGGTCGCCTTGTGAGACCCACAGAAGCAGCAGGATGCCGCTGGCCTCTGCAGTGGGGCCCGTGCACCGTGAGACAGGCTCAGCTGGAAAGGAAGTGAGTTGAGTCGAGGCTGGGAGGGCATAATGGGTGAGAGGGGTGCCTCCTGGAACTTGAGCTGCCTGCCAGGTCCCAGCCACAGCCAGTGGCCAGGGCCAGCCCCACCTGCGTCCACGGAGCGCTTGGTGAGTCACCATGTGGACAGCGCCTCCCCCGCCCCAAGACGTTCACTGGGGCACTGAGGGCACCCTACCCAGGAGCCTCAGGCATGTGTGGTTCCTGGGCTGTCTGGTATTTTCTAAAAAACAATGGAATTCAGGGTAAGCAAAGAGGTCTCTGGGGCTTGCAGAGCTGGGCACCCAGCTCAGCAGACCTCCTCTGAATACACCCCTGAATACACTGCCATCTCACTTCAAGGAAAAACACGTGTTTTACATTAAAAGTGTCTCTGTAACCTCAGAATGAAAAGACAATGGTTTTAGCGATAGCTGCTATACCTTCCCTTTGGGAATGAAAACAGGCTCTGGACCCTTCGGGTGACCCCTGAGCCACCTCGGGAGGGTGGAGTCCCACAGCAGATGGGTTGCACCGCTGTGCTTGGGAGCCCCTCGCTGCCGGACCCCAGACGCCCCGAGTGGAGCTGGCAGCCTGCAGGCAGAGGGTCTGAGGTCAAAACCCACAGGTTTGGACAAAACTGATCCTGGCAGGTGCTCATACCAACTGTCCGGGCCATCCTAACCTCTCCAGCAAACAGGAATGAAGCCTAGTGCTTTCACACCTGTAGGTCGGTGCTGTTTCTGGATTTGTCTTATGGTCCCAGGTTGGGCAGCTCCCTCAGGCCCGGGCTTTGTCACCATTCTGCCCGCCTCCTGCCTCAAATATCTGCAGTAAATGCTCAGAGAATGACTGGTCTGAGTGGACCACATCACCCTCGAGGGGCAGGGGGCTGCTCTGATCCTCTTGCCCTGAGACACCTCCCGATGGGCCAGGCCCTGGAGCCGGCTTGAGCCTGCGCCTGCCCCCCCTCTTGCAG
Seq C2 exon
TGGGAAGCCCCTCCGGTCGTTTTTCTCCTCTTACCTGAGGTCACTGCCGGGAGTGAGGAAGAAACCAGGTTCCCTTCCTGGGAGACCCAGCAGAGACGAGAGCTCGGAAGCCGTGGTCTGGAGGGACTTTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011129:ENSBTAT00000042859:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.174
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATCTTGGACCTGATTCCA
R:
TGTCAAAGTCCCTCCAGACCA
Band lengths:
280-1463
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development