MmuINT0130227 @ mm10
Intron Retention
Gene
ENSMUSG00000036327 | Qsox2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:MGI Symbol;Acc:MGI:2387194]
Coordinates
chr2:26220909-26222366:-
Coord C1 exon
chr2:26222221-26222366
Coord A exon
chr2:26221044-26222220
Coord C2 exon
chr2:26220909-26221043
Length
1177 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
3' ss Seq
TGCCCTTCTTCCTTTCACAGTGC
3' ss Score
11.43
Exon sequences
Seq C1 exon
GTGATCTTAGATTTGATTCCATATGAAAACATCATGGTGAGCCGAGCACTGGATACGGACAAAGCATTTCTGGGGACACTTGGCATTACTTCAGTGCCTTCCTGTTACTTGATTTACCCAAATGGGTCTCATGGACTGGTTAATGT
Seq A exon
GTAAGTACTACTTTGTATAATGAGTGGGTGAGCATTCAGTAAGGGCTGTGGAGACTTGCAGTTCACTGGCATACTGGATAAAGGCTCAGAGTCCACGTGACAGACTCTAGCTGGCTAAGATGTAAGGAAGCCATATTCCCCAGCCATCTTCTCCGAACTGCCTATGACCATGCCCCAGGATCTGGGGTAGTTGTTTGCCATGAGTTTCTGAGCAAACCCCAAGTGCAACAGGTATCCCCTCCTTTGGTAAGTCTGGGCTTTTGTTTGTGTCCGTTGTGTGACCAACAAACTCTGTAGAGGGAGAGGTTGGGGTGGGCACCAGGCAACAGGTCAATAAAGTGACCTTGAATAAAGCTTCAGAAAGCAAAACAGATGTGCGAGTTCATGAAAGCTGTAAGGCTGCAGGAGAGCCTTGGCTAGCGTGCAGGAAGCCTGGGTTTGATCTGTTGCTGCATGCCTGGGCATGATGCATACCTGTAATCTCAGCATTTGGGGGGTGAGGCAAGAGAATCAGAAGTTTAAGGTCATCTTTGGCTACATAGGAACTACATGAAACCCTCTCTCAAAGGGGGAGAAAAAGCAGAGCACCTGAGGTCATAGAGCTTCTTGGGAGGCCCTGGGCACCTGGGAGGCTGCTCTAACAGTTACTGCCGTGGCTGCCACTGGGTTCCGATGACAGTTGTGTGTAACTTAGCACAAGCATATCACATGTGCAACCTCTAACACAAAGCCACATTAATACTGTACAGCCACACTACTGTATTCTCTGCAAGGGACACTGATGGCTTCTGAGCATCTGATAGCTTGGGAGGTGCTAACTCTAGGCCTGGCCTCCAGACATGGTTCCGATGGCAGAGCAAGTGTGTCATGAAGGCCTCTGGGACAGTAGAGTCATAGCCAAGATGAAGCTGATTGTGGTAGATGCTCCAACAGCTTTACAAACGTCCTAAGTTCCAGCAAGTATGGGTGAGCTTACTGCAGCTGTCAGTCAGGGTGTCTCTGCACTCGATGTTCTGTCTCCTCGTCTGAGATGGGACTCAGCTGACACGGGTGCCCTTCATCACCTTTGTCAGTGTGTGCACAAGGGGAATGGCCAGTCTGTTCCAAGCTATGGCCTGCAGAGGCTGTGTGATCTTGATAGCCATAAAAAACATCCCTGCCCTTCTTCCTTTCACAG
Seq C2 exon
TGCAAAGCCTCTACGATCGTTTTTCTCCTCTCATTTAAAATCCTTACCAGATGTAAGGAAAAAGTCACTTTTCTTGCCTGAAAAGTCCAACAAAGAAGAAAAATCAGAGGTGGTGGTTTGGAAAGAATTTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036327:ENSMUST00000036187:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACATCATGGTGAGCCGAGC
R:
TGTCAAATTCTTTCCAAACCACCAC
Band lengths:
254-1431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types