DreINT0017537 @ danRer10
Intron Retention
Gene
ENSDARG00000077174 | QSOX2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:HGNC:30249]
Coordinates
chr5:63617776-63618159:+
Coord C1 exon
chr5:63617776-63617921
Coord A exon
chr5:63617922-63618015
Coord C2 exon
chr5:63618016-63618159
Length
94 bp
Sequences
Splice sites
5' ss Seq
TGTGTACGT
5' ss Score
3.32
3' ss Seq
TTTTATTTTGTTGTTCACAGGCA
3' ss Score
10.66
Exon sequences
Seq C1 exon
GTAATTTTGGACCTGATGCCATATGAGGGTTTGGTGGTGAAGAGAGCTCTGAGCTCAGACCAACTTCTAATGGACAAGCTGGGGATTAGTTCAGTTCCCTCGGCGTACCTTTTCCAGCCCAACGGCACACACACTGTTTTGAATGT
Seq A exon
GTACGTTAAATGGCCTCTGCTGAGTTCATTTTGGTCAAACTATTAAATAGATGAATTGTTTATTTTATGTGTTTTTTTATTTTGTTGTTCACAG
Seq C2 exon
GCAGAAGAAGTTACGTTTTTTCTTCTCCTCCTTCCTAAAACTTCTCCCTGGAGTACACAGAAAACAGTCCACCTCGTCCCTGCAGCGTCCTCAGCCTGGGATTAATGGACAGGGAGCCCAGGTGGAGTGGAAAGAGTTTAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077174:ENSDART00000111282:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.184
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCCTCGGCGTACCTTTTC
R:
CCCTGTCCATTAATCCCAGGC
Band lengths:
167-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]