RnoINT0121289 @ rn6
Intron Retention
Gene
ENSRNOG00000018574 | Qsox2
Description
quiescin sulfhydryl oxidase 2 [Source:RGD Symbol;Acc:1584720]
Coordinates
chr3:3674965-3676245:-
Coord C1 exon
chr3:3676100-3676245
Coord A exon
chr3:3675100-3676099
Coord C2 exon
chr3:3674965-3675099
Length
1000 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
3' ss Seq
CTCCCTTCTTCCTTTCACAGTGC
3' ss Score
11.44
Exon sequences
Seq C1 exon
GTGATCTTAGATTTGATTCCATATGACAACATCATGGTGAGCCGAGCACTGGATACGGACAAAGCATTTCTGGGGACCCTTGGCATTTCGTCAGTTCCTTCCTGTTACTTGATTTACCCAAATGGGTCTCATGGTCTGGTTAATGT
Seq A exon
GTAAGTGCTAGTTTGTATAAAGAATAGGTCTGCGGAGACTTAAGCTTCTCTGGCATACTGGATAAAGGCTCAGAGTCCACGTGACAGACTCTAGCTGGCTAAGATGTAGTGAAGCCATCTTCCCCTGGCCATCTTCCCAAACCTGCTATGACAGTGTTCCAGGCCCCAGGATCTGGGGTGGTCGTTGTCCCTGATTGTTTCCATGAATTTCTGAGCAAACCCCAAGTACAATAGGTGTCTGTTGACCCCTCCTGTGGTACGTCTGGGCTTTTGTTTGTGTCTGTTGTGTTATCAGCAAACTCTATAGAGTGAGAAGTTAGGGTGGGCACCAGCAACAGGTCAATAAAGTGTCCTTGACTAAAGCTTCAGAAAGCAAAACAGATGTGAGAGTTAATGAAAGTTGCAGGGCTGCAGGAGAGCCTTCTTAAGATCTCAGCTACACCCCACAGCTGTATGCAGGTTAGCCTTGGTTAGAGCACAGGCAGCCTGGGTTTGATCCTGTTACCACATGCCACTAGGCATGGTGGCTCATACCAGTAATCTCAGCATTTGGAAGGTGAGGCAGGAGAATCAGAAGTTTAAGGCTATCTTTGGCTACATAGGGTCTACATGAGACCCTCTCTCAAAAAAGGAAACAGAAAATAAGAATCCAGGGCACCCAAGGTCATAGAGCTTCCTGGGATAGACCCTGAACATCTGGGAGGCTGCCATTGGGTTCTAGTGAAGGTTGTCTGTAATCTTAGCACAAGCACGTCACGTGCAACCTCTGTCACAAAGCCACGTTAATACTGTACACTACTGTACGTGTACTGCAGGTGTGGACGAGATGACTGCGGCTGTAAGCCAGTGAGTCTCTGTCCCCATCTCAGGTGGGAGGGTGGCTCCTTCGCCAGTGTCCGTACAAGGGGAATGGCTAAACAGCTCTCCTCCAGGCTGCGGCCTGGAGGGGCTGCATGATCTTCATAGCCATAAAAACATCCCTCCCTTCTTCCTTTCACAG
Seq C2 exon
TGCAAAGCCTCTACGGTCGTTTTTCTCCTCTTATTTAAAATCCTTACCAGATGTGAGGAAAAAGTCACTTTCCTTGCCTGAAAAGCCCAACAAAGAAGAAAATTCAGAGGTTGTGATTTGGAAAGAATTTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018574:ENSRNOT00000061735:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.109
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTTGATTCCATATGACAACATCA
R:
TGTCAAATTCTTTCCAAATCACAACC
Band lengths:
272-1272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]