GgaINT0125838 @ galGal3
Intron Retention
Gene
ENSGALG00000001758 | QSOX2
Description
NA
Coordinates
chr17:8717886-8718526:+
Coord C1 exon
chr17:8717886-8718031
Coord A exon
chr17:8718032-8718382
Coord C2 exon
chr17:8718383-8718526
Length
351 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
TTTTGTCCCTTTATACACAGTCT
3' ss Score
6.97
Exon sequences
Seq C1 exon
GTTATCTTAGATTTGATCCCATATGAAAACATTGTTGTGAAGAGAGCACTGAATTTTGATAAGCCTTTCCTAGAGAAACTTGGGATTACCTCAGTCCCTTCGTGCTACCTGATGCATCCTAATGGATCACATGGGTTAGTTAACAG
Seq A exon
GTAGGTAGTTTCTGTCTCAAGGGAACATAGGAGGATTCACTTAAGCAACAGCAACTGTTTTTTAAAGCTTCCTTTTATATAAAGTAAGTTATTTTATAATCATTTTTGCACATGTATAATGGCGTTGTGTCTTGGCATGTACTCAGTATGCTGTGTTTGATTCCTTTGTGTTTGACTATTGTCTTGAGCACTCTTCAGCAGTTACTAATTGTATTTAGTGGTCTCGTTATACATTTGCTCTTTATGAATGTTTATAATACATAGAAATGGGTTATGCCAGTAGAAATGTTATGAATATACTATATTAATTCAAGATGAAAAATAATCTGGATTTTGTCCCTTTATACACAG
Seq C2 exon
TCTGAAGCCCCTACGGTCGGTCTTTTCTTCATATTTGAAGTCTCTGCCAGGTGTAAGAAAGAAACTTCTTTCACCACTTGAGCTGCCTGTTAAAGAAAACAAAGAGGAGAGCACAGAGATCAAGCTGTGGAAGGAGTTTGATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001758:ENSGALT00000034856:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATCCCATATGAAAACATTGTTGT
R:
TTATCAAACTCCTTCCACAGCTTGA
Band lengths:
278-629
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]