HsaINT0135823 @ hg38
Intron Retention
Gene
ENSG00000165661 | QSOX2
Description
quiescin sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:HGNC:30249]
Coordinates
chr9:136219030-136221941:-
Coord C1 exon
chr9:136221796-136221941
Coord A exon
chr9:136219165-136221795
Coord C2 exon
chr9:136219030-136219164
Length
2631 bp
Sequences
Splice sites
5' ss Seq
CGTGTGAGT
5' ss Score
7.42
3' ss Seq
TGCCCTCCCCTCTCTCACAGCGT
3' ss Score
11.69
Exon sequences
Seq C1 exon
GTGATCTTAGACCTGATCCCGTATGAAAGCATCGTGGTGACCCGAGCACTGGACGGGGACAAAGCATTTCTGGAGAAACTTGGTGTTTCTTCAGTCCCTTCGTGTTACCTGATCTACCCAAATGGGTCGCATGGATTGATTAACGT
Seq A exon
GTGAGTGCCCGGGTGGGGTCTGGGAACTCCGTGCCGCTCGGAGTTACCGGACAGAGGCTCCGAGTAGACAGTGCAAGTCTGGTGTGAGATCGGGGGAGCCCTGGCCCCTCCGCCTCGCTTCCCTGGGCAGATTTGGGCCCTGGCTCTCAGCCCGTGGGTATTGCTGATCTGTGCTGTGTTTTCGTGGATTTCTGTTTTCTCACTGCTGTGTCCCCGCACCTAGGAGGAGCCTGGCGTGGTGACTTACCAAGAGTCGCAGAGGAAACCGTGGCTAAACCAGCACATGCATGAGGGCTGCTGGGCCGGGGCTTTGGGAGCAGCCGATGCTCCTAAAACCCTGCTCTGGGTGGACTCTTGGGATGCAGTTTGGGTCTGTGTCTGGGGCTGGCAGACAAGCCCACGTGCCCACCTCTGCAGAATGAGAAGTAGGGGTGGGCACCAGGCCCTGCCCCTCACGTTCTGCTCTTTCTCTAAGAACTGCAGAACCTTGGCAAGCCCTTTGCCTCTGCGTGGGGTGCCCGTGTGCCCCTCATGAGGATAAGCCCTTCGCCCCTGCGTGGGGTGCCTGTGTGCCCCTCATGAGGATAAGCCCTTTGCCCCTGCGTGGGGTGCCCGTGTGCCCCTCATGAGGATAAGCCCTTCGCCCCTGCGTGGAGTGCCTGTGTGCCCCTCATGAGGATAAGCCCTTTGCCTCTGTGTGGAGTGCCTGTGTGCCCCTCATGAGGATAAGCCCTTTGCCTCTGCGTGGAGTGCCTGTGTGCCCCTCGGATAAGCCCAATGAAAAAGTAAACAACTTGAATCAGGTTAGAAAAAGAACAGTGAGAAAAATGAGGCTGGGCACAGGTGAATCATTTGAGTCTAGGAGTTCCAGACCAGCCTGGGCAACATAGTAAGACCCCATCTATACTAAAAAAAAGACTAGCCAGGTCTGGTGGTGTGCCACTGTAGTCCCAGCTACTCAGGAGGCTGAGGTGGGAGGATCACTTGAGCCTCAAAGGTCAAGGCTGCAATGAGCTGAGATCCTGTCACCGCACTCCAGCCTGGGCGACAGAGTCAGACTCCATCTCAAAAAAAAAAGAAAGAAAATGAAAAATGGTTGAGAAAGTTAAGTAACGTCCTGAGGCTGGAGGGGCCCCGCTCCTCCTCACCTTGGGGAGAAGGACAGCGTGAGGAGAAGGACAGCGTGAGGCTAGCCTGCCCTACACTGGGTGGCCCCTTCCCCTGGCCTGAAGTTGCAGCACCTGCAGGCTTCCAGCATGTGCTGGTTTAGCCACGGTTGACTCTGCGGCTCTTGGTGACTCACCACGCCGGGCTCCGAGGTGCAGGGACACAGCAGTGAGAAGATAGGACGTGTTTCCTGTCTCTTGGGGCTTCCAGTTCAGCCTCCTCAAAGATCGACTGGGGCATAGAGGGCGCCTTACAGAAGCCCAGAACACCGCAGTTTCTTAAGTATTTTTCTTTCCTTTTGAAAAAGAGGCCAGGCTCACACCTGTAATCCCAGCACTTTCAGAGGCTGAGATGAGAGGATTACTTGAGCCCAGGAGTCTGAGACCAGCCCAGGTTGATAGTGAGACTCCAGCCTATGACAAATAAAACATTAGCCGGGCGTGGTGGAGTATGTCTGTGGCTACATCTACTCAAGGGGCTGAGGTGGGAGGATCATTTGAGCCCAGGAGGTTGAGGCTGCAGTGAGCTGAAATTGCACCACTGCACTCCAGCCTGGGCAACAGAGAAAGATCCTGTCTCAAAAATAGATAAATGAGTGAAAATACAAAAGATAAAGCTGGAATTCAGGGTAACCACAGAGGCCATTGAGCTTGTTGGGAGATGCTCTGAGTGCTTGGGGGCCTGGCTCTGCCAACGAGGTGGCCCATTCCAGGCCTGGGGCACAGCACTGCACTTGGCAGAGCGGCCTGAACCACTCCCAGATGTTTGTTTAGTGTTAAAAGTATCATCTAGACAACTTCTTAGTGTCAAATAATGTTAATATTTTTATAGATATTTTAATGTTTTTGCAAATAGCACTGCTACATTCTGTCTTTGGAAACAAGCTCCACGTCACACTGAAGTGCTCAATAATGGCATTGAGGGTGTCCTCAGAAGGCAGCTCCACCCTGTCCACACAGCGTGGGCACACAGGGGGCTCAGCTCCACCCTGTCCACACAGGGTGGGCACGCAGGGAGCTCAGGGGCCTGACATCAGGGAGGGGCTGACGTCCACCCCAGGCCCCGACTTCCAGATGCCTCACTCAGGGCTGGCAGATTGTGGGCGCGTCGGTGAAGGCTCTTAGGCGTGTTGGAAATCGCAGTCAGAATAAAGCTCATCTTGGCAGATGCTCAACCCAGCTTTACAAAACGCCTTAAGGTCCCCACAAACATAAATGAGTCATAGTACTTATTACAACTGGAACTGGTTGTAAATCTGTGGATTTGGTGTGTCTCCTCTTATCCCCCAGGTGGAAGCGCAGCCGGAGCCCAGGCGGGGTGTCAGCTGTTCCCACTGACTCCCATGCCCCAATAAATGCCCAAAGGATGAAAGGGGTGGCCCAGAGCTGTCCTGAATGCCACGGCTCCTACTTTAGGATTTTATAAAGGAGGCTCTTCTCACCTTTGCCCTCCCCTCTCTCACAG
Seq C2 exon
CGTGAAGCCTCTGCGGGCCTTCTTTTCGTCTTATTTGAAGTCATTGCCGGATGTGAGGAAAAAATCGCTTCCCTTGCCTGAAAAGCCACACAAAGAAGAAAATTCAGAAATCGTGGTTTGGAGAGAATTTGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165661:ENST00000358701:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.122
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development