BtaINT0121065 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011129 | QSOX2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:HGNC:30249]
Coordinates
chr11:103753579-103756023:-
Coord C1 exon
chr11:103755894-103756023
Coord A exon
chr11:103753702-103755893
Coord C2 exon
chr11:103753579-103753701
Length
2192 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
3' ss Seq
GCGTGGTCCTTCCTGCCCAGCTC
3' ss Score
5.79
Exon sequences
Seq C1 exon
GTCAAAGCTGTACACGGCCGACCTGGAGTCAGGGCTGCACCACCTCCTGAGAGTGGAGCTTGCAGCACACAGGTCCCTGGCCGGCGCCGAGCTAAAGACGCTCAAGGACTTCATCACTGTCCTGGCCAAG
Seq A exon
GTGCGTGGGCGTCTGACTTGGGGCAGGGCCCCCTGGCCACAGGGAGCCGGGTGTGCCTGGGGACGCACGTGGCAGGGACAAGAGTCCTGCTCAGGTGGAGTCCCTGTGTAGGGTGCTGGAGACGAGCGCCGGGTGGGGGCGTGTGGAGCAGAGAGGAGGGGATTGTGCGGGAGTGTGGCTCGGTGTGTTCTAAAGGGCTCAGTGGTGTAAAGGGCTTGGTGTGGTCTGAAGGGCTTGGTGGTCTAAAGGGCTCAGTGTGGTCTGAAGGGGGCCATGCCAGGCCAGATGTGAGTGGGCGGCAGGCAGCAGGATGAGAAGGGAGCACGAGGGGAGCAGGGAGTGGGCGGGAGGCCTGTGTGTCTGGGGGTCGGTGGAGATGGAGGGTGGTGGGTTTACAGGGAGGAGACGCCTGTGGCCGGTGCATTGGGTGGGCCCTGGGGGTGGGCCAGGTTGGCATGCCCACCTTTAGTAGTAGGTGGGGCAGGGGTGGCTTTGTGCTTGCTCGGGTCTAGAAGTGAGGAGCTGTCGGGCGGCATCCATTTCCTGCTGAGAACTCTGAGTTCCCGAGCTAAGAGTCCGGGCCCGTGGTCTGTGGGCACAGGTTCAGGCAGTCGGGTGTCCCTGCCCCCTAGGGAGAATCTGCACCCTGTTCTGCTGGCCCGGCAGCCCTGCTGTGGCCCTCTGCTCTCCGACCTCAGAGAGAGCCCAGGCCCTTGGGTCGCGCCCACCTGTTGGTCACCTTTGATCCTGCACTGCCTCGGGAGGAATCTGCTTCCAGAGGCCACTCTCTATAGCCTCTGATGTGATCTGACAAGATCTGAGATACTGTTTATTATTGCCTGAGAGATAAGGAGACTTAGTTTGAAATGATTCCTGTTGCCAAGTGTGCAGCCCCAACACATGCATGCACACACGCTCAGTTGCATCCAGCTCTGCGACCCCAAGAACCGCAGCCCGCCAGGGCCCTCTGCCCACGGGATTCTCCAGGCAAGATACTGGAGTGGGTTGCCATTTCCTCCTCCAGGGGATCTTCCCCACCCAGGGATCAGACTCGTGTCTCTTGCGTCTCCTGCATTGGCAGGTGGATTCTTTAGCAGTGGCGCCACCTGGGAAGCCCTGCTGACACAGTAGCTCCTAAGCGATAATTTGGCTGGTCAGAGTTTACTTAGTAAGGTCGTTTAAAAAAGTAAAGAGCTAGAACTTATGTTTAAGGGAATAGAAAGCTACATGGTGTGTTGCAAATGAATAAATGGAGACTGTCGAGACGGTTCTCCCCCCACATGACCTCAGAGGTCAGAGCTCTCGCGCCGTTCTCGTTCCTTTGAGAAAGTGCCCCCCTGGCTGCCCAGCTATTAGCGTGTCAAGATGGGGGTCTCGCTCTGCACATGAGTTCTTTGTCCTCGTCTTTTCTGGTGTCAGGCTGGAGGGCACGCATGGCCTATAAGATTAGCATAGCTTATTCTTAACAACTTTCTGAAGTTTACTTAACTTGAAATGCTGGTCAGTTGATACTGATGCTCTATAACCGATGGAGGAAAAACCCAGACTTGGCAGAGCTGAAGACGGGGCGTTTTTGGTCCCAACGCTGTCGTTAGGGCAGCGTCGGCCCTTAATTTGCACGTGTAATTGGCAGCATCTGAGCGAAGGTCCTCACAGGACAGCTGCGGGCTCCTTGCTCGAGGCTTCCCTGGCGCCGTGGTGCCGCCAGCATGGCCTGAGTGTCCATGTGCAGCTGAGCAGCGGGTGGCACTTGTTTGCACGGAAGCCTCGAGTGTGCGTACCTCTCCAGTCCAAGGGCAGAGCCGGTGGGGGGTTGGGGGCTGCTGGTGGTGGCAGGGAGTGAGGGGAGCAGCGGATGGGTGTAAGTTACGCTGAGGCACGCGGACTGAGCGAGTCGGCAGTGATTTCGGAGAGGCCCCCCGAGCCCTTGGCAGCGTGACGAATGAGGTCCTGGGTGGCCGTGGGCCTGTCGTCAGGTGTGAGGGCAGTGGTGGGGCTGGAGAAAGGGGAGGTGCAGCCCCCAGGCCGCCTTGTCTGTGTTCTGGAGAGACTCCCACCTGGTTCTCGGGCAGCCGGTGGGTCAGGTTGGGGCAGGCCAGGTCGGGGCAGGCCTGGTCTCGGCCCCTGGGAGGCCATGCCTGCCATGGGGCGTGCTCTCTGAACAGTCCCTGAGCGTGGTCCTTCCTGCCCAG
Seq C2 exon
CTCTTCCCCGGACGACCGCCAGTCAGGAAGCTGCTGGAGATGCTGCAGGAGTGGCTGGCCAGCCTTCCACTGGACAGGATCCCCTACGATGCCGTGCTTGACCTGGTCAACAACAAGATGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011129:ENSBTAT00000042859:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development