HsaINT0135825 @ hg19
Intron Retention
Gene
ENSG00000165661 | QSOX2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:30249]
Coordinates
chr9:139108446-139110654:-
Coord C1 exon
chr9:139110525-139110654
Coord A exon
chr9:139108569-139110524
Coord C2 exon
chr9:139108446-139108568
Length
1956 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGG
5' ss Score
5.28
3' ss Seq
GTGGCTCCTTCCTCATGCAGCTG
3' ss Score
9.14
Exon sequences
Seq C1 exon
GTCGAAGCTGTACACGGTGGACCTGGAGTCAGGGCTACACTACCTCCTGCGGGTGGAGCTGGCAGCCCACAAGTCCCTGGCCGGAGCAGAGCTGAAGACGCTCAAGGACTTTGTGACTGTCTTGGCCAAG
Seq A exon
GTTTGGGACGGTGCTGGTCTGGGCTGCATGTGGGAATTTGGCTCTGCACAGAGTGGGCCCTGGGGGGCGTCGGACACTGCGGGGGCTCCGCCAGCTCCGCTGAGGTGCTCTCCACCTTGCTTTGTCGCCCAGGCCCACGCCCCAACTCATTCCACCCATTTCCCGAGTGCCTCCTGCGTCCACTGCTGTTCCCAGCACTGGGGCTGGGGCGGTGGGTGTAGAGAGGGGCGGGGGTGTGAGCCGAGCACCTGCTGGAAAAGCCCAGCTCTGGCTGCCTGGAGAGTAGATGGAGGAGGGAGCGGAGGCCCACACACACCTCAGCTGGCTCTCAGAGGAGCGCTGCACGGGGGCTGGGGGGAGAGAGAGAGGGAGAGGCAAGGGCTGTGCAGATCCAGGTGGGGTGTGCATCTGCCCCACCAGCCAGGTTCAGGGAGGGGTCCTGGGAGCTTCACGCTCAGCACCATCACCAGCACAGATGTGGTGTCTGAGACCACTGAGGGGGTCGCCAGGAGCGGGCAGAGATGCCACCCAACAGAGCTCAGGCCTGGCCGTGCCCAGGGTCAGGCTGAAGAGGACCAGCCAGGGAGGTGGCCAGGTGTAACTCCATGAGCTCGGTTGCTTGTTACTGTCTAAATGACAAGAAGGCTTAGGCTTAAAATATTTATCTTGCCAAAAATAAGATGCATGATAGAATAATTTATAGTGAGCACTTTGGATAGAGTTTACTTACAAAGTGATTTGTGAAAAGTACAGGAAATCTTGAAGGACTGGAGGTGCCTCAGATGAATGCATGAACATTGCCCAGGCAGCTTTTTCCCCCACGGTGCCATCCAGAGTTCAGAAATCTCTAGCTGGCCTCATTTCCTTTAAGAAAGTGTCCTGCTAATCTGTCCATCATATTAGTGGAGGACAGTGTGGCTCTTAGTGGTGGTGGCCGCCGGCCAGCTAATTCGCTGGAGTCGCACAGCTGTCGCTAGGCAGACCTGCTCTCCTCTCCCGGCTTCTCCGTCTTCCCCTTAGTCTAGTTAGGCTTGGAGCTTTTACACTTGTGCTCTGGGCAACTCCTGAGGCCAGGGTATTAATAAGTTATTCTTAATATTTTTCTGAAGTTTACTTGGATGTCTAAAATAAATTTGATTCTGGTAAATTAATCATGGTACTTTTTAACCTGCACGGGAGAAAATATATTGGACTGAGCTGAAGATGCCGGCGTTTCTGGTCTGGCATCGCCACCTGTGAGCTTCAGCTCGGGTTTGAGGAACTCTTTTGGTGGCTGGTGTTTCTGGTCTGGCATTGCCACCCGTGAGATTTCAGCTCGGGTTTTCGGAGCTCTTTCGGCAGCCTATGTTTTGCACAGTTTGTGGTGCAGCAGCTGATCAGAGTTTCTCCTAAAAAGACAGAGCCCTGGGATCTTCTCAGCCAGACGCCTCCCCAAGCTGTGTTGATGTCGGCCAGCCTCACGGCCCACACAAGCCCATAGGCAGTTAGCCCCGGCTGCCGGCGCATGTGCACTGCCGCGCGCCCTTCATACAGTCAGTGACGGCAGAGGGGAAGCCCAGCGGGCGGGCAGGCGGGGTCAGCACAGCTCCTCGTGAGGAAGGCAGAATAAATCAGCAAGCCCCCGCCAGCTCCATGATGAGTCACACACCGTGACCTTGCCTGTCACCTGGCCGGAGCGAGGCCGTGGGCGCAGGTGGGTGAGCTGCAGGCACGGGCTGGAGAAAGGCATGGCCGTGGGCACAGGCTGTCCTGGGGAGAGGCGCAGGCTAGATGCCCACCCCATGGCCCCTTGGGTTTCCTGCCTCCCATCAGAGAAACCCGAGTTATGAGAGGCCCCATCCTAGGTTCAGCCCCTCTGCGGATGGAGTGCTTCTCTTTGGAGGTGCGGTGCCCCCCGCGGTGGGGGCGGGCCCGGGTTTGGGTCTGTAGCTCTCAGGTGGCTCCTTCCTCATGCAG
Seq C2 exon
CTGTTCCCTGGACGGCCGCCAGTCAAGAAGCTGTTGGAGATGCTGCAGGAGTGGCTGGCCAGCCTTCCCCTGGACAGGATCCCCTACAACGCCGTGCTTGACCTGGTCAACAACAAGATGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165661-QSOX2:NM_181701:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAGCTGTACACGGTGGAC
R:
CGCATCTTGTTGTTGACCAGG
Band lengths:
250-2206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)