GgaINT0125840 @ galGal4
Intron Retention
Gene
ENSGALG00000001758 | QSOX2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:HGNC:30249]
Coordinates
chr17:8030187-8032706:+
Coord C1 exon
chr17:8030187-8030316
Coord A exon
chr17:8030317-8032583
Coord C2 exon
chr17:8032584-8032706
Length
2267 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
TTCTTTTTTAATATCCTCAGCTT
3' ss Score
6.47
Exon sequences
Seq C1 exon
ATCGAAGCTGTACATGGCTGACCTTGAATCTGGATTGCATTACCTGTTCCGGGTAGAGCTTGCTACACACAAGATGCTTGAGGGAGCTGAGCTAAAGACCTTCAAGGATTTTGTTACCATCTCTGCCAAG
Seq A exon
GTGTGTACTTCTGCTCCTTGATTATTTCAAGGAAAAAAAAAAGGACTGTAACATAAAATTTATTGTGATGTAAGCTTCTCAAAATGTCTTTCAGAATATATTTAAATACGTGCTTTTCCAATAGCTTAAAAAATAGTTTTGTGAAATTCTGTAAATGTTGTTTTTTGAGTTATTTTCTACCGTACTGATATCCTTAAAGAACTGAAATGCAGTTTAATTTCATCTCAGAGAGATCAAACTTGAATAAAGGCTAAGCCATCTGCAGCATATTGAATGAATGCTATAAATATAGTCCATTTATCAGATCTTTGGGATAAATAGCTATTTTAACTCAGTAAGTAAAAGTATTATTTTCATTTTTAAATTTTGTTATGGCATGCTTGACAAATAGTGCTCTATTTAGAGATTTCTAATTTTAGTCTAAATTTTGAATGTGATTGAGGTTGAGTATTTCAAAAATGAAGATGCTCACACATTACACCTGTAATAAAAGCAACGTATGCAATGTAACTTGGAAAAAAAAATGAAATTTAACTTTAACATCAGCCTTATGAAATGAGCAGACTCTCTCTACATCTACTTACTGAACAGCTAACACTTTGCTTTATTTAAAATACCTGAACCAATTCCTGCTGAAAGGAATAATAAGGGCTGTATGATCTATTCCCTGCTGTATGGGTGTATCAGTCAGACAGTTTCTTGCCCCCCTGCGGCCATCAGAGGTCAGAAATCTCTAGCTGGCCTCATTTCTTTAAGAAAGTGTGGTGGTAATCTTTCCATCATATTATCCCTAAAACATCCTCTGTTCTTCCTGATGGCTCCTGGCCAGCTTATGTCATTTGTTTCCTTGGCTATTAGTGCATAAATGGAGAATGCTGTTGCATGCTCATCTCCAGATTGCCATTATACGTGTGGGAACTCCTGTCCTTTATTTGCATTCTTTTGTTGTGAAAAGCTTTTCTCTTGGTTCTCATTCACAATTCCCACATACTTACATGTGGACAGTTTACATCTGAGGCAGTCAGAATGCTAAGTTTGCAGTGTTGGTACTATAATTATATGCATCTTTCTGCAGGCTCACGGCACTGAATTTCAAAGTTGAACTCTGTATCTTGCTTTCCTTTTTAACAAAGTACCCAGCAATCAATCCATAACAACAGCTTTGTGAATCAGGACTTCCAACACTTTTTATCCTATCCTCCTGTTTAACAGCATTTAAAATGATGATAAATTCTAAATCCAGAGATCTGATCTCTGCCCCCCTGCTAGGGAAATCTTCATTATTGTAGAATTAGATTGTATTTTTTTCTTCTTCCATGAAATATATCTACCAGAAACACCCTGCAACTATTGTCTTTTAGATAGTAATGTATGATATTTTGGGATTCCTACAGGAGTAGATGGGATTATAGATGCTGTCTGTAGTACAGAAGTATGCTGTTTTAGTTGTATAGTTGGACTGTGGCTGCAAAGGGACTTATATGTGCAGAGCATCTCCTGACATCTATTAAATACATGAAATGTATTTAAGACAGCAGATACAGGGACTTTGTTTCCCCTTCCTCTGGAGAGGTACTTAGAAGGTGTTGTGCATACTCAATTCTATAGTAAATACAACAATCAAGCAAGCATTTCTAGTGTATAATAATGATATGACTGCTGATTTACAGTTCCTCATACTTGTCTGACAGAGCTTGACTGCTTTAACTTGCAGGTTAAGGTAATCACCATTTCCAAACCACTTTGGAAATCACTTTTACACGTATGAAAAGGAAAGTTATTTTTCTAGATAACCACCATCATCAACACCTTAAAAAAAAAAAAAAACACAAAGAAAAACAGAATAAAAATATTATAAGAACCAGTTGCTGTGGTTTATATGCAAAGAGTGAGAAAGGATTTCAGCCTTTCTTAGGTCTTATGCTCCTTAAGCTGTACACTAAGCTGAATTACCTTCATAGAAAATTCTGTGTAATCTGTCAAAAGTTGTTCTGCTTGAAGTTGAGTATCTTCATGCTGGTTAACATTTTGCAAATGTTTTAAAAGCGTTAAATTTTATGAGTTACTGTGAGATAACTGATAAACACATTTAGTGGTAAGCAGAATGTGTTTGCACACAACAAAAGAAAATCTTGTCTATTAAACTTAATGGATGCATTTCAAAGACAAGAAAAACACACTTAGCTAAACATAAAACTGTCGTGCTGCTAATGAAAGTTGCGCTTTAAAACGTTATTCTATTTTCTTTTCTTTTTTAATATCCTCAG
Seq C2 exon
CTTTTTCCTGGCCGTCAGCCTGTGGTGAAGTTGTTAGAGACCTTGCAGGAGTGGCTGGTGAGCCTTCCATTAGACAAAATCCCTTATGATGCTATTCTAGATCTGGTCAACAACAAAATGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001758:ENSGALT00000034856:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF088066=Sep15_SelM=PU(23.6=29.5)
A:
NA
C2:
PF088066=Sep15_SelM=FE(72.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]